SMTL ID : 7yfk.1

The structure of human pregnane X receptor in complex with an SRC-1 coactivator peptide and a limonoid compound, nomilin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x G3L: Nomilin(Non-covalent)

G3L.1: 19 residues within 4Å: Chain A: S.80, L.81, K.82, V.83, L.112, M.115, S.119, F.123, F.153, Q.157, F.160, W.171, Y.178, L.180, H.199, L.283, I.286, F.292, F.301 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.83, A:M.115, A:F.160, A:W.171, A:W.171, A:Y.178 Hydrogen bonds: A:S.119, A:Q.157 G3L.2: 18 residues within 4Å: Chain B: S.80, L.81, V.83, L.112, M.115, S.119, F.123, F.153, Q.157, F.160, W.171, L.180, L.196, H.199, H.279, L.283, I.286, F.292 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.81, B:V.83, B:M.115, B:F.160, B:F.160, B:F.160, B:W.171, B:W.171, B:L.283 Hydrogen bonds: B:S.119, B:Q.157 Salt bridges: B:H.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, S. et al., Pregnane X receptor agonist nomilin extends lifespan and healthspan in preclinical models through detoxification functions. Nat Commun (2023)

Release Date

2023-06-14

Peptides

Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1