- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 9 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)
- 6 x R16: HEXADECANE(Non-covalent)
R16.5: 3 residues within 4Å:- Chain A: Y.1506
- Ligands: Y01.4, Y01.16
No protein-ligand interaction detected (PLIP)R16.6: 3 residues within 4Å:- Chain A: G.159, W.160, K.212
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.160, A:W.160
R16.10: 3 residues within 4Å:- Chain A: P.644, I.647, S.1400
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.644, A:P.644, A:I.647
R16.12: 4 residues within 4Å:- Chain A: I.1359, W.1360, Y.1700, V.1704
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.1359, A:W.1360, A:W.1360, A:Y.1700, A:V.1704
R16.21: 4 residues within 4Å:- Chain A: G.225, V.299, I.684, L.688
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.684, A:L.688
R16.22: 6 residues within 4Å:- Chain A: L.577, W.586, V.593, V.1295, F.1299, F.1413
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.577, A:W.586, A:W.586, A:V.1295, A:F.1299, A:F.1413, A:F.1413
- 2 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
3PE.7: 13 residues within 4Å:- Chain A: F.242, Y.243, K.246, L.322, G.323, T.325, W.326, N.327, L.329, N.1571, S.1573, F.1574, L.1577
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:F.242, A:L.322, A:W.326, A:F.1574, A:L.1577
- Hydrogen bonds: A:W.326, A:N.1571, A:S.1573
- Salt bridges: A:K.246
3PE.8: 11 residues within 4Å:- Chain A: Q.291, D.293, N.294, L.296, F.297, L.300, V.673, S.674, M.677
- Ligands: Y01.15, Y01.16
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.296, A:L.296, A:L.300
- Hydrogen bonds: A:Q.291, A:D.293, A:D.293, A:N.294
- 2 x CA: CALCIUM ION(Non-covalent)
CA.18: 3 residues within 4Å:- Chain A: E.309, E.1372, G.1662
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.309, A:E.309, A:E.1372
CA.23: 4 residues within 4Å:- Chain A: D.116
- Chain C: S.261, S.263, T.331
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain A- Metal complexes: C:S.261, C:S.263, C:T.331, A:D.116
- 1 x TOR: [(3aS,5aR,8aR,8bS)-2,2,7,7-tetramethyltetrahydro-3aH-bis[1,3]dioxolo[4,5-b:4',5'-d]pyran-3a-yl]methyl sulfamate(Non-covalent)
TOR.19: 13 residues within 4Å:- Chain A: V.210, S.213, F.354, E.357, N.363, S.599, S.602, I.603, L.606, A.700, I.701, D.704, N.705
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:V.210, A:E.357, A:L.606, A:D.704
- Hydrogen bonds: A:S.213, A:S.599, A:S.602, A:S.602, A:D.704, A:N.705
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.24: 3 residues within 4Å:- Chain C: L.89, N.92, E.199
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:L.89
- Hydrogen bonds: C:N.92, C:E.199, C:E.199
NAG.25: 1 residues within 4Å:- Chain C: N.324
No protein-ligand interaction detected (PLIP)NAG.26: 2 residues within 4Å:- Chain C: N.346, N.348
No protein-ligand interaction detected (PLIP)NAG.27: 3 residues within 4Å:- Chain C: T.587, R.589, N.604
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:T.587
- Hydrogen bonds: C:R.589, C:N.604
NAG.28: 4 residues within 4Å:- Chain C: E.80, A.83, R.84, N.613
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:E.80, C:A.83
- Hydrogen bonds: C:N.613
NAG.29: 3 residues within 4Å:- Chain C: N.675, T.677, E.678
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.675, C:T.677
NAG.30: 1 residues within 4Å:- Chain C: N.888
No protein-ligand interaction detected (PLIP)NAG.31: 5 residues within 4Å:- Chain C: V.107, R.114, E.121, N.184, W.185
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:V.107
- Hydrogen bonds: C:R.114, C:R.114, C:E.121
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, Y. et al., Structural insights into the allosteric effects of the antiepileptic drug topiramate on the Ca V 2.3 channel. Biochem.Biophys.Res.Commun. (2024)
- Release Date
- 2023-11-29
- Peptides
- Voltage-dependent R-type calcium channel subunit alpha-1E: A
Voltage-dependent L-type calcium channel subunit beta-1: B
Voltage-dependent calcium channel subunit alpha-2/delta-1: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 9 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)
- 6 x R16: HEXADECANE(Non-covalent)
- 2 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 1 x TOR: [(3aS,5aR,8aR,8bS)-2,2,7,7-tetramethyltetrahydro-3aH-bis[1,3]dioxolo[4,5-b:4',5'-d]pyran-3a-yl]methyl sulfamate(Non-covalent)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, Y. et al., Structural insights into the allosteric effects of the antiepileptic drug topiramate on the Ca V 2.3 channel. Biochem.Biophys.Res.Commun. (2024)
- Release Date
- 2023-11-29
- Peptides
- Voltage-dependent R-type calcium channel subunit alpha-1E: A
Voltage-dependent L-type calcium channel subunit beta-1: B
Voltage-dependent calcium channel subunit alpha-2/delta-1: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
D - Membrane
-
We predict this structure to be a membrane protein.