SMTL ID : 7ygg.1 (1 other biounit)

Crystal structure of human CD47 in complex with engineered SIRPa.D1(N80A)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.76 Å

Oligo State

hetero-1-1-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain B: D.46 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.46 EDO.4: 0 residues within 4Å: (No contacts) 3 PLIP interactions: 3 interactions with chain B Water bridges: B:K.43, B:G.44, B:N.93

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain B: G.92, N.93, E.110 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.93, B:E.110 NAG.3: 5 residues within 4Å: Chain B: E.11, F.12, N.16, V.19, V.20 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.12, B:V.19 Hydrogen bonds: B:E.11, B:N.16, B:V.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, J. et al., Crystal Structure of Human CD47 in Complex with Engineered SIRP alpha.D1(N80A). Molecules (2022)

Release Date

2022-10-19

Peptides

SIRPA protein: A
Leukocyte surface antigen CD47: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

SIRPA protein

Leukocyte surface antigen CD47

Related Entries With Identical Sequence