SMTL ID : 7ygw.1

Crystal structure of the Zn2+-bound EFhd1/Swiprosin-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.41, D.45, F.47, E.52 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.41, A:F.47, A:E.52, H2O.1, H2O.1 ZN.2: 5 residues within 4Å: Chain A: D.77, D.79, D.81, K.83, E.88 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.77, A:D.81, A:K.83, A:E.88, H2O.1 ZN.3: 2 residues within 4Å: Chain A: K.54, H.66 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.66, H2O.2 ZN.4: 2 residues within 4Å: Chain A: H.66, K.70 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.66

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: F.16, E.21, F.22, E.78, R.87 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.21, A:R.87, A:R.87 Water bridges: A:E.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mun, S.A. et al., Structural and biochemical insights into Zn 2+ -bound EF-hand proteins, EFhd1 and EFhd2. Iucrj (2023)

Release Date

2023-03-15

Peptides

EF-hand domain-containing protein D1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EF-hand domain-containing protein D1

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