SMTL ID : 7yl2.1

Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor Y07004

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x JCO: N-(1-ethyl-2-oxidanylidene-3H-indol-5-yl)cyclohexanesulfonamide(Non-covalent)

JCO.1: 10 residues within 4Å: Chain A: W.54, P.55, F.56, V.60, L.65, L.67, Y.70, N.113, I.119, M.122 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.54, A:P.55, A:P.55, A:F.56, A:L.65, A:L.67, A:I.119 Hydrogen bonds: A:N.113

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: G.116, D.117, D.118 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.116, A:D.118, A:D.118 Water bridges: A:I.119

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 6 residues within 4Å: Chain A: I.73, I.74, K.75, T.76, N.108, I.111 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.75, A:T.76, A:T.76, A:N.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Y. et al., Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor Y07004. To Be Published

Release Date

2023-07-26

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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