SMTL ID : 7ymr.3 (3 other biounits)

Complex structure of lysoplasmalogen specific phopholipase D, F211L mutant with LPC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

monomer

Ligands

1 x KIP: [(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{5}-azanyl)ethoxy]phosphoryl]oxy-propyl] hexadecanoate(Non-covalent)

KIP.1: 15 residues within 4Å: Chain A: H.20, E.24, E.47, H.62, H.98, E.149, K.151, T.183, L.185, P.204, L.209, F.213, Q.227, W.256, S.258 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.183, A:L.185, A:L.209, A:F.213, A:W.256 Hydrogen bonds: A:H.20, A:S.258 Salt bridges: A:E.24, A:H.62, A:K.151 pi-Cation interactions: A:H.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hamana, H. et al., Structural basis for the substrate specificity switching of lysoplasmalogen-specific phospholipase D from Thermocrispum sp. RD004668. Biosci.Biotechnol.Biochem. (2022)

Release Date

2023-02-08

Peptides

Lysoplasmalogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Lysoplasmalogenase

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