- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-octamer
- Ligands
- 8 x TFX: 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium(Non-covalent)
TFX.1: 9 residues within 4Å:- Chain A: K.80, V.82
- Chain C: Y.39, E.46, K.80, T.81, V.82
- Ligands: TFX.2, TFX.6
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:V.82, C:Y.39, C:Y.39
TFX.2: 6 residues within 4Å:- Chain A: Y.39, E.46, K.80, T.81, V.82
- Ligands: TFX.1
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:Y.39, A:Y.39
TFX.3: 8 residues within 4Å:- Chain B: K.80, V.82
- Chain D: Y.39, E.46, K.80, T.81, V.82
- Ligands: TFX.4
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain D- Hydrophobic interactions: B:V.82, D:Y.39, D:Y.39
TFX.4: 9 residues within 4Å:- Chain B: Y.39, E.46, K.80, T.81, V.82
- Chain H: K.80, V.82
- Ligands: TFX.3, TFX.7
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain H- Hydrophobic interactions: B:Y.39, B:Y.39, H:V.82
TFX.5: 8 residues within 4Å:- Chain E: K.80, V.82
- Chain G: Y.39, E.46, K.80, T.81, V.82
- Ligands: TFX.6
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain G- Hydrophobic interactions: E:V.82, G:Y.39, G:Y.39
TFX.6: 9 residues within 4Å:- Chain C: K.80, V.82
- Chain E: Y.39, E.46, K.80, T.81, V.82
- Ligands: TFX.1, TFX.5
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain E- Hydrophobic interactions: C:V.82, E:Y.39, E:Y.39
TFX.7: 9 residues within 4Å:- Chain F: K.80, V.82
- Chain H: Y.39, E.46, K.80, T.81, V.82
- Ligands: TFX.4, TFX.8
3 PLIP interactions:2 interactions with chain H, 1 interactions with chain F- Hydrophobic interactions: H:Y.39, H:Y.39, F:V.82
TFX.8: 6 residues within 4Å:- Chain F: Y.39, E.46, K.80, T.81, V.82
- Ligands: TFX.7
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:Y.39, F:Y.39
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tao, Y.Q. et al., ThT-bound alpha-synuclein fibrils conformation 1. To Be Published
- Release Date
- 2023-08-02
- Peptides
- Alpha-synuclein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
GF
HG
IH
J
SMTL ID : 7ynm.1
ThT-bound alpha-synuclein fibrils conformation 1
Alpha-synuclein
Toggle Identical (ABCDEFGH)Related Entries With Identical Sequence
1xq8.1 | 2kkw.1 | 2n0a.1 | 6cu7.1 | 6cu8.1 | 6l1t.1 | 6l1u.1 | 6osj.1 | 6osl.1 | 6osm.1 | 6rt0.1 | 6rtb.1 | 6sst.1 | 6ssx.1 | 6xyo.1 | 6xyp.1 | 6xyq.1 | 7c1d.1 | 7l7h.1 | 7nca.1 | 7nca.2 | 7ncg.1 | 7ncg.2 | 7nch.1 | 7nch.2 | 7nci.1 | 7nci.2 | 7ncj.1 | 7ncj.2 | 7nck.1 more...less...7ozg.1 | 7ozh.1 | 7v47.1 | 7v48.1 | 7v49.1 | 7v4a.1 | 7v4b.1 | 7v4c.1 | 7v4d.1 | 7wmm.1 | 7xjx.1 | 7xo0.1 | 7xo1.1 | 7xo2.1 | 7xo3.1 | 7yk2.1 | 7yk8.1 | 7ynf.1 | 7yng.1 | 7ynl.1 | 7ynn.1 | 7yno.1 | 7ynp.1 | 7ynq.1 | 7ynr.1 | 7yns.1 | 7ynt.1 | 8a4l.1 | 8a9l.1 | 8ads.1 | 8adu.1 | 8adv.1 | 8adw.1 | 8aex.1 | 8bqv.1 | 8bqw.1 | 8ce7.1 | 8ceb.1 | 8cyr.1 | 8cys.1 | 8cyt.1 | 8cyv.1 | 8cyw.1 | 8cyx.1 | 8cyy.1 | 8cz0.1 | 8cz1.1 | 8cz2.1 | 8cz3.1 | 8cz6.1 | 8fpt.1 | 8h03.1 | 8h04.1 | 8h05.1 | 8hzb.1 | 8hzc.1 | 8hzs.1 | 8jex.1 | 8jey.1 | 8oqi.1 | 8pix.1 | 8pk2.1 | 8pk4.1 | 8ri9.1 | 8rqm.1 | 8rrr.1 | 8uka.1 | 8zwi.1 | 8zwj.1 | 8zwk.1 | 9cd9.1 | 9cda.1 | 9ck3.1 | 9cx6.1 | 9cx6.2 | 9euu.1 | 9fyp.1 | 9ijp.1