SMTL ID : 7ynn.1

ThT-bound alpha-synuclein fibrils conformation 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

8 x TFX: 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium(Non-covalent)

TFX.1: 2 residues within 4Å: Chain A: Y.39 Ligands: TFX.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.39, A:Y.39 TFX.2: 3 residues within 4Å: Chain B: Y.39 Ligands: TFX.4, TFX.8 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.39, B:Y.39 TFX.3: 4 residues within 4Å: Chain C: Y.39 Chain E: Y.39 Ligands: TFX.1, TFX.5 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:Y.39, C:Y.39 TFX.4: 2 residues within 4Å: Chain D: Y.39 Ligands: TFX.2 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:Y.39, D:Y.39 TFX.5: 3 residues within 4Å: Chain E: Y.39 Ligands: TFX.3, TFX.7 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:Y.39, E:Y.39 TFX.6: 2 residues within 4Å: Chain F: Y.39 Ligands: TFX.8 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:Y.39, F:Y.39 TFX.7: 2 residues within 4Å: Chain G: Y.39 Ligands: TFX.5 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:Y.39, G:Y.39 TFX.8: 4 residues within 4Å: Chain B: Y.39 Chain H: Y.39 Ligands: TFX.2, TFX.6 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:Y.39, H:Y.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tao, Y.Q. et al., ThT-bound alpha-synuclein fibrils conformation 2. To Be Published

Release Date

2023-08-02

Peptides

Alpha-synuclein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
G

F
H

G
I

H
J

Alpha-synuclein

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