SMTL ID : 7ynp.1

BF227-bound alpha-synuclein fibrils

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

2 x IZM: 5-[(~{E})-2-(6-methoxy-1,3-benzoxazol-2-yl)ethenyl]-~{N},~{N}-dimethyl-1,3-thiazol-2-amine(Non-covalent)

IZM.1: 8 residues within 4Å: Chain A: E.46, K.80 Chain B: K.80, V.82 Chain D: Y.39, G.41, T.44, E.46 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.82, B:V.82 Hydrogen bonds: B:K.80 IZM.2: 8 residues within 4Å: Chain C: E.46, K.80 Chain E: K.80, V.82 Chain F: Y.39, G.41, T.44, E.46 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:V.82, E:V.82 Hydrogen bonds: E:K.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tao, Y.Q. et al., BF227-bound alpha-synuclein fibrils. To Be Published

Release Date

2023-08-02

Peptides

Alpha-synuclein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Alpha-synuclein

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