SMTL ID : 7ynv.1

Crystal structure of photolysed Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: S.60, C.64, N.65, S.72, R.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.64, A:S.72

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: Y.23 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: K.33, F.38 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: S.24, L.25, G.26, Q.121, I.124 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: N.65, G.67, R.68, T.69, S.72 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: A.11, D.87, I.88 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 6 residues within 4Å: Chain A: Q.57, I.58, N.59, W.63, A.107, W.108 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.108 Hydrogen bonds: A:Q.57, A:N.59 Water bridges: A:N.59, A:N.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hosaka, T. et al., Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography. Int J Mol Sci (2022)

Release Date

2022-09-21

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

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