SMTL ID : 7ynw.1

Crystal structure of O-(2-nitrobenzyl)-L-tyrosine-tRNA sythetase in complex with O-(2-nitrobenzyl)-L-tyrosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-dimer

Ligands

2 x J2F: (2~{S})-2-azanyl-3-[4-[(2-nitrophenyl)methoxy]phenyl]propanoic acid(Non-covalent)

J2F.1: 17 residues within 4Å: Chain A: G.32, I.33, G.34, E.36, I.63, I.64, G.65, A.67, H.70, I.137, Y.151, Q.155, S.158, I.159, E.162, V.164, Q.173 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:E.36, A:A.67, A:I.159, A:V.164 Hydrogen bonds: A:E.36, A:Y.151, A:Y.151, A:Q.155, A:Q.155, A:S.158, A:Q.173 Water bridges: A:V.103, A:E.108, A:Q.109 J2F.2: 17 residues within 4Å: Chain B: G.32, G.34, F.35, E.36, I.63, I.64, G.65, A.67, H.70, E.108, Y.151, Q.155, S.158, I.159, E.162, V.164, Q.173 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:E.36, B:A.67, B:I.159, B:E.162, B:V.164 Hydrogen bonds: B:E.36, B:I.64, B:Y.151, B:Q.173, B:Q.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hosaka, T. et al., Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography. Int J Mol Sci (2022)

Release Date

2022-09-21

Peptides

Tyrosine--tRNA ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine--tRNA ligase