- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADX: ADENOSINE-5'-PHOSPHOSULFATE(Non-covalent)
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
ANP.2: 21 residues within 4Å:- Chain A: P.13, S.14, G.15, A.16, G.17, K.18, T.19, T.20, V.85, R.117, P.119, K.120, L.122, T.153, M.156, T.157, V.158, E.161
- Ligands: ADX.1, MG.3, BO3.4
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:G.15, A:A.16, A:G.17, A:K.18, A:K.18, A:T.19, A:T.19, A:T.20, A:T.20, A:T.20, A:K.120, A:M.156
- Water bridges: A:T.19, A:L.21, A:D.42, A:R.117, A:R.117
- pi-Cation interactions: A:R.117
ANP.6: 21 residues within 4Å:- Chain B: P.13, S.14, G.15, A.16, G.17, K.18, T.19, T.20, V.85, R.117, P.119, K.120, L.122, T.153, M.156, T.157, V.158, E.161
- Ligands: ADX.5, MG.7, BO3.8
17 PLIP interactions:17 interactions with chain B- Hydrogen bonds: B:G.15, B:A.16, B:G.17, B:K.18, B:K.18, B:K.18, B:T.19, B:T.20, B:T.20, B:T.20, B:K.120, B:M.156
- Water bridges: B:D.40, B:D.40, B:R.117, B:R.117
- pi-Cation interactions: B:R.117
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: T.19, D.40, K.120
- Ligands: ANP.2
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:T.19, H2O.1, H2O.2, H2O.2
MG.7: 3 residues within 4Å:- Chain B: T.19, D.40
- Ligands: ANP.6
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:T.19, H2O.7, H2O.8, H2O.8
- 2 x BO3: BORIC ACID(Non-covalent)
BO3.4: 5 residues within 4Å:- Chain A: G.15, D.118, P.119, K.120
- Ligands: ANP.2
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.15, A:D.118, A:K.120
- Water bridges: A:K.120
BO3.8: 6 residues within 4Å:- Chain B: S.14, G.15, D.118, P.119, K.120
- Ligands: ANP.6
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.120
- Water bridges: B:K.120
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawakami, T. et al., Crystal structure of adenosine 5'-phosphosulfate kinase isolated from Archaeoglobus fulgidus. Biochem.Biophys.Res.Commun. (2022)
- Release Date
- 2023-01-18
- Peptides
- Adenylyl-sulfate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADX: ADENOSINE-5'-PHOSPHOSULFATE(Non-covalent)
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x BO3: BORIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawakami, T. et al., Crystal structure of adenosine 5'-phosphosulfate kinase isolated from Archaeoglobus fulgidus. Biochem.Biophys.Res.Commun. (2022)
- Release Date
- 2023-01-18
- Peptides
- Adenylyl-sulfate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
E