SMTL ID : 7yro.1 (3 other biounits)

Crystal structure of mango fucosyltransferase 13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: W.121, L.176, E.177, Y.202, F.207 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.176, A:E.177, A:E.177, A:Y.202 Water bridges: A:E.156, A:D.175 GOL.6: 5 residues within 4Å: Chain B: W.121, L.176, E.177, Y.202, F.207 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.177, B:Y.202, B:Y.202 Water bridges: B:E.177 GOL.7: 6 residues within 4Å: Chain A: R.373, C.374 Chain B: M.109, H.111, S.113, D.151 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.77, A:C.374, B:S.113, B:S.113 Water bridges: B:S.113

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 5 residues within 4Å: Chain A: M.109, H.111, S.113, D.151 Chain B: R.373 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.111 ACY.8: 6 residues within 4Å: Chain B: W.121, T.201, Y.202, G.204, F.207, L.388 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.388

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 4 residues within 4Å: Chain A: S.230, R.231, R.236, K.311 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.229, A:S.230, A:R.231 Salt bridges: A:R.236, A:K.311

1 x PPV: PYROPHOSPHATE(Non-covalent)

PPV.4: 7 residues within 4Å: Chain B: S.228, S.229, S.230, R.231, R.236, N.301, K.311 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.229, B:S.229, B:S.230, B:R.231, B:N.301 Salt bridges: B:R.231, B:R.236, B:R.236, B:K.311, B:K.311

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain B: P.56, N.221, D.222 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:D.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okada, T. et al., Crystal structure of mango alpha1,3/alpha1,4-fucosyltransferase elucidates unique elements strictly regulating its type I-dominant acceptor preference. To Be Published

Release Date

2023-08-16

Peptides

Fucosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fucosyltransferase

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