SMTL ID : 7ysz.1

Spiroplasma melliferum FtsZ bound to GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 19 residues within 4Å: Chain A: G.19, G.20, A.21, N.24, G.103, M.104, G.106, G.107, T.108, G.109, P.134, E.138, R.142, N.165 Chain B: F.137, F.181, A.184, D.185 Ligands: TRS.2 21 PLIP interactions: 17 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:G.20, A:A.21, A:N.24, A:G.107, A:T.108, A:T.108, A:G.109, A:E.138, A:R.142, A:R.142 Water bridges: A:G.22, A:G.71, A:M.104, A:G.106, A:T.110, A:T.132, A:T.132, B:D.185 Salt bridges: B:D.185 pi-Stacking: B:F.181, B:F.181 GDP.3: 19 residues within 4Å: Chain A: F.137, G.139, D.185 Chain B: G.19, G.20, A.21, N.24, G.103, M.104, G.106, G.107, T.108, G.109, T.132, P.134, E.138, R.142, N.165, L.168 20 PLIP interactions: 17 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.20, B:A.21, B:G.107, B:T.108, B:T.108, B:T.108, B:G.109, B:E.138, B:R.142, B:R.142, B:N.165, B:N.165 Water bridges: B:G.103, B:M.104, B:G.106, B:T.108, B:T.110, A:R.140, A:R.140 Salt bridges: A:D.185

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 9 residues within 4Å: Chain A: G.19, G.20, N.43, D.45, I.48 Chain B: S.136, F.137, G.139 Ligands: GDP.1 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:G.20, A:N.43, A:N.43, B:F.137 Water bridges: A:G.71, B:E.138, B:R.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chakraborty, J. et al., Structural basis of kinetic polarity of FtsZ from a cell wall less bacterium Spiroplasma. To Be Published

Release Date

2023-08-16

Peptides

Cell division protein FtsZ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cell division protein FtsZ

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