SMTL ID : 7yu4.1

Human Lysophosphatidic Acid Receptor 1-Gi complex bound to ONO-0740556, focused on receptor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.30 Å

Oligo State

monomer

Ligands

1 x K6L: [(2~{R})-2-[5-(2-hexylphenyl)pentanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate(Non-covalent)

K6L.1: 15 residues within 4Å: Chain A: Y.43, K.48, L.114, T.118, T.122, R.133, Q.134, D.138, Y.211, W.219, L.287, E.302, K.303, F.305, L.306 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.211, A:W.219, A:W.219, A:L.287, A:L.306, A:L.306 Hydrogen bonds: A:E.302, A:E.302 Salt bridges: A:K.48, A:R.133, A:K.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akasaka, H. et al., Structure of the active G i -coupled human lysophosphatidic acid receptor 1 complexed with a potent agonist. Nat Commun (2022)

Release Date

2022-10-05

Peptides

Lysophosphatidic acid receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Lysophosphatidic acid receptor 1

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