SMTL ID : 7yub.1

S1P-bound human SPNS2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x S1P: (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate(Non-covalent)

S1P.1: 11 residues within 4Å: Chain D: Y.116, Y.120, F.151, S.211, I.238, T.329, L.332, G.333, E.433, F.437, S.464 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:I.238, D:I.238, D:T.329, D:L.332, D:L.332, D:E.433 Hydrogen bonds: D:Y.116, D:S.464

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duan, Y. et al., Structural basis of Sphingosine-1-phosphate transport via human SPNS2. Cell Res. (2024)

Release Date

2023-09-06

Peptides

NbFab-H-chain: A
NbFab-L-chain: B
Tc-Nb8: C
Sphingosine-1-phosphate transporter SPNS2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
N

D
R

Membrane

We predict this structure to be a membrane protein.
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NbFab-H-chain

NbFab-L-chain

Tc-Nb8

Sphingosine-1-phosphate transporter SPNS2

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