SMTL ID : 7yud.1

FTY720p-bound human SPNS2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x J89: (2~{S})-2-azanyl-4-(4-octylphenyl)-2-[[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxymethyl]butan-1-ol(Non-covalent)

J89.1: 13 residues within 4Å: Chain D: Y.116, Y.120, I.238, S.242, S.326, T.329, L.332, G.333, I.336, F.366, E.433, F.437, S.467 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:I.238, D:T.329, D:L.332, D:I.336, D:F.366, D:F.437 Hydrogen bonds: D:Y.116, D:Y.116, D:S.326, D:S.326, D:S.467

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duan, Y. et al., Structural basis of Sphingosine-1-phosphate transport via human SPNS2. Cell Res. (2024)

Release Date

2023-09-06

Peptides

NbFab-H-chain: A
NbFab L-chain: B
Tc-Nb8: C
Sphingosine-1-phosphate transporter SPNS2: D
anti-Fab nanobody: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
N

D
R

E
K

Membrane

We predict this structure to be a membrane protein.
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NbFab-H-chain

NbFab L-chain

Tc-Nb8

Sphingosine-1-phosphate transporter SPNS2

anti-Fab nanobody

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