SMTL ID : 7yui.1

Crystal structure of HOIL-1L(195-423) in complex with the linear tetra-ubiquitin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: C.181, T.183, C.186, C.201, C.204 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.181, B:C.186, B:C.201, B:C.204 ZN.2: 4 residues within 4Å: Chain B: C.9, C.12, C.23, C.26 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.9, B:C.12, B:C.23, B:C.26 ZN.3: 4 residues within 4Å: Chain B: C.209, C.212, H.216, C.221 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.209, B:C.212, B:H.216, B:C.221 ZN.4: 4 residues within 4Å: Chain B: C.92, C.95, C.115, C.118 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.92, B:C.95, B:C.118 ZN.5: 4 residues within 4Å: Chain B: C.110, H.112, C.133, C.142 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.110, B:C.133, B:C.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Mechanistic insights into the enzymatic activity of E3 ligase HOIL-1L and its regulation by the linear ubiquitin chain binding. Sci Adv (2023)

Release Date

2023-08-30

Peptides

Polyubiquitin-C: A
RanBP-type and C3HC4-type zinc finger-containing protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Polyubiquitin-C

RanBP-type and C3HC4-type zinc finger-containing protein 1