SMTL ID : 7yuj.1

Crystal structure of HOIL-1L(365-510)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-dimer

Ligands

10 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.113, C.133, C.142, C.149 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.113, A:C.133, A:C.142, A:C.149 ZN.2: 5 residues within 4Å: Chain A: C.135, C.142, C.146, C.149 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.135, A:C.142, A:C.146, A:C.149 ZN.3: 4 residues within 4Å: Chain A: C.87, C.90, C.105, C.108 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.87, A:C.90, A:C.105, A:C.108 ZN.4: 5 residues within 4Å: Chain A: C.11, T.13, C.16, C.31, C.34 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.16, A:C.31, A:C.34 ZN.5: 4 residues within 4Å: Chain A: C.39, C.42, H.46, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.39, A:C.42, A:H.46, A:C.51 ZN.6: 5 residues within 4Å: Chain B: C.11, T.13, C.16, C.31, C.34 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.11, B:C.16, B:C.31, B:C.34 ZN.7: 4 residues within 4Å: Chain B: C.39, C.42, H.46, C.51 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.39, B:C.42, B:H.46, B:C.51 ZN.8: 4 residues within 4Å: Chain B: C.87, C.90, C.105, C.108 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.87, B:C.90, B:C.105, B:C.108 ZN.9: 6 residues within 4Å: Chain B: C.113, C.133, C.135, C.142, C.149 Ligands: ZN.11 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.113, B:C.133, B:C.142, B:C.149 ZN.11: 5 residues within 4Å: Chain B: C.135, C.142, C.146, C.149 Ligands: ZN.9 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.135, B:C.142, B:C.146, B:C.149

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 4 residues within 4Å: Chain B: I.140, P.141, H.143, P.144 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Mechanistic insights into the enzymatic activity of E3 ligase HOIL-1L and its regulation by the linear ubiquitin chain binding. Sci Adv (2023)

Release Date

2023-08-30

Peptides

RanBP-type and C3HC4-type zinc finger-containing protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RanBP-type and C3HC4-type zinc finger-containing protein 1