SMTL ID : 7yw4.1

Crystal structure of tRNA 2'-phosphotransferase from Saccharomyces cerevisiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 18 residues within 4Å: Chain A: I.116, H.117, G.118, T.119, K.126, I.127, S.130, A.132, I.133, S.134, M.136, S.137, R.138, H.142, L.143, S.144, M.157, V.187 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:H.142, A:V.187 Hydrogen bonds: A:H.117, A:G.118, A:G.118, A:T.119, A:S.123, A:S.130, A:S.130, A:S.134, A:R.138, A:H.142 Water bridges: A:H.142 Salt bridges: A:H.117, A:R.138, A:R.138

1 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.2: 5 residues within 4Å: Chain A: R.138, N.139, H.140, H.142, L.189 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.139, A:H.140, A:H.142 Salt bridges: A:H.140, A:H.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X. et al., Structural and biochemical insights into the molecular mechanism of TRPT1 for nucleic acid ADP-ribosylation. Nucleic Acids Res. (2023)

Release Date

2023-07-26

Peptides

tRNA 2'-phosphotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

tRNA 2'-phosphotransferase