SMTL ID : 7ywe.1

Monocot chimeric jacalin JAC1 from Oryza sativa: dirigent domain (crystal form 2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-trimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: D.65, K.72, R.99 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.72, A:R.99 PO4.3: 5 residues within 4Å: Chain B: H.32, P.34, Q.41, H.81, W.87 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.41 Salt bridges: B:H.32, B:H.81 PO4.4: 5 residues within 4Å: Chain C: H.32, P.34, Q.41, H.81, W.87 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.41, C:W.87 Salt bridges: C:H.32, C:H.81 PO4.5: 4 residues within 4Å: Chain C: K.72, D.97, E.98, R.99 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.97, C:E.98, C:R.99 Salt bridges: C:K.72

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain A: H.32, P.34, Q.41, H.81, E.113 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.34, A:P.34 Hydrogen bonds: A:Q.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huwa, N. et al., The Crystal Structure of the Defense Conferring Rice Protein Os JAC1 Reveals a Carbohydrate Binding Site on the Dirigent-like Domain. Biomolecules (2022)

Release Date

2022-05-04

Peptides

Dirigent protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Dirigent protein

Related Entries With Identical Sequence