SMTL ID : 7ywp.1

Closed conformation of Oligopeptidase B from Serratia proteomaculans with covalently bound TCK

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x TCK: N-[(1S)-5-amino-1-(chloroacetyl)pentyl]-4-methylbenzenesulfonamide(Covalent)

TCK.1: 10 residues within 4Å: Chain A: Y.451, Y.454, S.531, A.532, F.557, L.571, E.575, Q.618, V.619, H.651 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.454, A:F.557, A:V.619 Hydrogen bonds: A:Y.454, A:S.531, A:A.532, A:Q.618 Water bridges: A:R.150, A:Q.618 pi-Stacking: A:Y.454

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrenko, D.E. et al., Crystal Structure of Inhibitor-Bound Bacterial Oligopeptidase B in the Closed State: Similarity and Difference between Protozoan and Bacterial Enzymes. Int J Mol Sci (2023)

Release Date

2023-02-22

Peptides

Oligopeptidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Oligopeptidase B