SMTL ID : 7ywu.4 (3 other biounits)

Eugenol oxidase from rhodococcus jostii: mutant S81H, A423M, H434Y, S394V, I445D, S518P

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

1 x I7I: [[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-5-[5-[(1~{R})-1-(3-methoxy-4-oxidanyl-phenyl)propyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-1~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate(Covalent)

I7I.1: 37 residues within 4Å: Chain A: Y.44, H.81, P.82, V.83, S.84, T.85, G.86, K.87, N.88, N.89, Y.91, G.93, T.106, P.150, D.151, L.152, G.155, S.156, G.159, N.160, L.162, G.165, V.166, Y.168, G.225, I.226, V.227, E.378, L.381, H.390, G.392, V.394, I.427, L.438, Y.471, R.472, K.513 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:Y.44, A:L.152, A:V.166, A:L.381, A:I.427, A:L.438 Hydrogen bonds: A:H.81, A:S.84, A:S.84, A:T.85, A:G.86, A:K.87, A:N.88, A:Y.91, A:D.151, A:S.156, A:N.160, A:N.160, A:V.166, A:V.166, A:Y.168, A:V.227, A:Y.471, A:Y.471, A:R.472, A:R.472, A:K.513

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.2: 30 residues within 4Å: Chain B: H.81, P.82, V.83, S.84, T.85, G.86, K.87, N.88, N.89, G.93, T.106, P.150, D.151, L.152, G.155, S.156, G.159, N.160, L.162, D.163, G.165, V.166, Y.168, G.225, I.226, V.227, H.390, L.438, R.472, K.513 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:L.152, B:L.438 Hydrogen bonds: B:S.84, B:S.84, B:T.85, B:G.86, B:K.87, B:N.88, B:T.106, B:D.151, B:D.151, B:S.156, B:N.160, B:V.166, B:V.166, B:V.227, B:R.472, B:R.472

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, Y. et al., Structure- and computational-aided engineering of an oxidase to produce isoeugenol from a lignin-derived compound. Nat Commun (2022)

Release Date

2022-11-16

Peptides

Probable vanillyl-alcohol oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
H

Probable vanillyl-alcohol oxidase

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