SMTL ID : 7yww.1

Monocot chimeric jacalin JAC1 from Oryza sativa: lectin domain (crystal form 2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

19 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: S.99, K.127 Ligand excluded by PLIP IOD.2: 5 residues within 4Å: Chain A: S.55, T.57, F.69, T.70, K.80 Ligand excluded by PLIP IOD.3: 6 residues within 4Å: Chain A: T.57, Y.59, S.66, I.67, S.68, P.83 Ligand excluded by PLIP IOD.4: 5 residues within 4Å: Chain A: E.48, S.49, D.73, H.74, A.75 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: T.47, Y.71 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: Y.130 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: V.29, S.49 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: G.82, W.84 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: S.115, N.163 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain A: G.110, P.111, T.116 Ligand excluded by PLIP IOD.11: 4 residues within 4Å: Chain B: S.55, T.57, F.69, T.70 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain B: S.49, H.74, A.75 Ligand excluded by PLIP IOD.13: 1 residues within 4Å: Chain B: S.142 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain B: P.34, R.157 Ligand excluded by PLIP IOD.15: 3 residues within 4Å: Chain B: P.28, V.29, S.49 Ligand excluded by PLIP IOD.16: 3 residues within 4Å: Chain B: G.97, S.99, K.127 Ligand excluded by PLIP IOD.17: 3 residues within 4Å: Chain B: K.160, Y.161, N.163 Ligand excluded by PLIP IOD.18: 1 residues within 4Å: Chain B: K.51 Ligand excluded by PLIP IOD.19: 3 residues within 4Å: Chain B: A.81, G.82, W.84 Ligand excluded by PLIP

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.20: 3 residues within 4Å: Chain B: P.91, I.92, M.93 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.21: 6 residues within 4Å: Chain B: G.36, S.37, S.38, E.40, F.109, T.116 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.38, B:E.40, B:T.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huwa, N. et al., The Crystal Structure of the Defense Conferring Rice Protein Os JAC1 Reveals a Carbohydrate Binding Site on the Dirigent-like Domain. Biomolecules (2022)

Release Date

2022-05-04

Peptides

Dirigent protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dirigent protein