SMTL ID : 7yx7.1

Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 1 spermine molecule at 1.72 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x SPM: SPERMINE(Non-covalent)

SPM.1: 6 residues within 4Å: Chain A: E.417, F.440, R.442, A.517, Q.518, Y.520 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.520 Hydrogen bonds: A:R.442, A:R.442, A:Q.518 Water bridges: A:A.517, A:Q.518, A:Q.518, A:Q.518, A:Y.520, A:Y.520

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Britikov, V.V. et al., Elucidation of the Conformational Transition of Oligopeptidase B by an Integrative Approach Based on the Combination of X-ray, SAXS, and Essential Dynamics Sampling Simulation. Crystals (2022)

Release Date

2023-01-18

Peptides

Oligopeptidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Oligopeptidase B

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