SMTL ID : 7yxu.1

Crystal structure of agonistic antibody 1618 fab domain bound to human 4-1BB.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x TMO: trimethylamine oxide(Non-covalent)

TMO.1: 4 residues within 4Å: Chain B: Q.39 Chain C: Q.38, P.40, G.41 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.41 Water bridges: C:K.39

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 3 residues within 4Å: Chain B: H.172 Chain C: N.137, N.138 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.172, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nelson, M.H. et al., The Bispecific Tumor Antigen-Conditional 4-1BB x 5T4 Agonist, ALG.APV-527, Mediates Strong T-Cell Activation and Potent Antitumor Activity in Preclinical Studies. Mol.Cancer Ther. (2023)

Release Date

2023-01-25

Peptides

Tumor necrosis factor receptor superfamily member 9: A
heavy chain of Fab: B
light chain of Fab: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Tumor necrosis factor receptor superfamily member 9

heavy chain of Fab

light chain of Fab

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