SMTL ID : 7yyg.1

Crystal structure of gatekeeper of type III secretion system in Bordetella BopN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.142 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.142

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: G.224, Q.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.228 Water bridges: A:Q.228

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.345 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: D.142 Ligands: CA.1 No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 4 residues within 4Å: Chain A: D.184, G.188, H.191, R.213 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.184, A:R.213 Salt bridges: A:H.191, A:R.213

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6: 2 residues within 4Å: Chain A: L.83, Q.136 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Navarrete, K.M. et al., BopN is a Gatekeeper of the Bordetella Type III Secretion System. Microbiol Spectr (2023)

Release Date

2023-03-01

Peptides

Putative outer protein N: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative outer protein N