SMTL ID : 7z05.1

White Bream virus N7-Methyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 16 residues within 4Å: Chain A: K.39, G.56, Y.57, G.58, D.62, D.77, T.78, A.79, M.82, G.100, F.101, F.118, N.119, S.120, Y.123, P.124 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.78, A:T.78, A:A.79, A:F.101, A:F.118, A:F.118 Water bridges: A:F.118 Salt bridges: A:K.39

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 2 residues within 4Å: Chain A: S.32, N.119 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.119 PEG.3: 5 residues within 4Å: Chain A: Y.38, T.41, A.142, N.143, N.244 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.143, A:N.244, A:L.245

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shannon, A. et al., A second type of N7-guanine RNA cap methyltransferase in an unusual locus of a large RNA virus genome. Nucleic Acids Res. (2022)

Release Date

2022-09-28

Peptides

Non-structural protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural protein 1

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