SMTL ID : 7z0x.1

THSC20.HVTR26 Fab bound to SARS-CoV-2 Receptor Binding Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 6 residues within 4Å: Chain C: F.9, G.10, F.13, N.14, V.38, L.39 No protein-ligand interaction detected (PLIP)

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 4 residues within 4Å: Chain A: S.108, G.109 Chain B: S.54, K.55 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:S.108, A:S.108, B:S.54, B:S.54 Water bridges: B:K.55 Salt bridges: B:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hingankar, N. et al., A combination of potently neutralizing monoclonal antibodies isolated from an Indian convalescent donor protects against the SARS-CoV-2 Delta variant. Plos Pathog. (2022)

Release Date

2022-04-13

Peptides

THSC20.HVTR26 Fab heavy chain: A
THSC20.HVTR26 Fab light chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
R

THSC20.HVTR26 Fab heavy chain

THSC20.HVTR26 Fab light chain

Spike protein S1

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