SMTL ID : 7z0y.1

THSC20.HVTR04 Fab bound to SARS-CoV-2 Receptor Binding Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 7 residues within 4Å: Chain C: F.9, G.10, F.13, N.14, V.38, L.39, S.42 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain B: P.7, R.8, S.9, T.147 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.8, B:S.9, B:S.9, B:S.9 Salt bridges: B:R.8 SO4.3: 2 residues within 4Å: Chain C: R.74, Y.176 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hingankar, N. et al., A combination of potently neutralizing monoclonal antibodies isolated from an Indian convalescent donor protects against the SARS-CoV-2 Delta variant. Plos Pathog. (2022)

Release Date

2022-04-13

Peptides

THSC20.HVTR04 Fab heavy chain: A
THSC20.HVTR04 Fab light chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
R

THSC20.HVTR04 Fab heavy chain

THSC20.HVTR04 Fab light chain

Spike protein S1

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