SMTL ID : 7z1a.1 (1 other biounit)

Nanobody H11 and F2 bound to RBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: F.9, G.10, F.13, N.14, V.38 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.9, A:F.13, A:V.38 Hydrogen bonds: A:N.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mikolajek, H. et al., Correlation between the binding affinity and the conformational entropy of nanobody SARS-CoV-2 spike protein complexes. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-03-23

Peptides

Spike protein S1: A
F2 Nanobody: B
H11 Nanobody: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

Spike protein S1

F2 Nanobody

H11 Nanobody

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