SMTL ID : 7z1g.1

Crystal structure of nonphosphorylated (Tyr216) GSK3b in complex with CX-4945

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x 3NG: 5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid(Non-covalent)

3NG.1: 16 residues within 4Å: Chain A: I.37, G.38, N.39, G.40, V.45, A.58, K.60, V.85, L.107, D.108, Y.109, V.110, L.163, C.174, D.175 Ligands: MLI.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.37, A:V.45, A:A.58, A:V.85, A:V.85, A:L.107, A:L.163 Hydrogen bonds: A:V.110, A:D.175 Water bridges: A:F.176, A:F.176 Salt bridges: A:K.60

5 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 6 residues within 4Å: Chain A: R.71, R.155, K.180, N.188, V.189 Ligands: MLI.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.189 Hydrogen bonds: A:V.189 Salt bridges: A:R.71, A:R.71, A:R.155, A:K.180, A:K.180 MLI.3: 4 residues within 4Å: Chain A: Q.160, N.161, D.175 Ligands: 3NG.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.161 Water bridges: A:K.158 Salt bridges: A:K.158 MLI.4: 7 residues within 4Å: Chain A: K.2, Y.31, Y.46, K.61, F.91, S.93, N.104 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.46 Hydrogen bonds: A:Y.46, A:S.93 Salt bridges: A:K.2, A:K.2, A:K.61, A:K.61 MLI.5: 5 residues within 4Å: Chain A: R.71, R.155, G.177, S.178 Ligands: MLI.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.71 Salt bridges: A:R.155 MLI.6: 6 residues within 4Å: Chain A: S.122, K.125, Q.126, T.127, L.227, G.228 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.122

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.7: 5 residues within 4Å: Chain A: V.117, Y.121, L.128, Y.132, Y.136 No protein-ligand interaction detected (PLIP) IMD.8: 5 residues within 4Å: Chain A: R.119, S.122, E.224, G.228, Q.229 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.122, A:E.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grygier, P. et al., Crystal structure of nonphosphorylated (Tyr216) GSK3b kinase in complex with CX-4945. To Be Published

Release Date

2023-03-08

Peptides

Glycogen synthase kinase-3 beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycogen synthase kinase-3 beta

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