SMTL ID : 7z1i.1 (2 other biounits)

Plant myrosinase TGG1 from Arabidopsis thaliana

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.09 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.18, Y.423 No protein-ligand interaction detected (PLIP)

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: Q.339, N.341, V.345, M.354, T.359 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.359 NAG.3: 8 residues within 4Å: Chain A: F.268, D.269, H.270, Y.337, N.364, T.366, H.368, A.369 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.270, A:T.366, A:H.368 NAG.4: 5 residues within 4Å: Chain A: D.90, E.91, N.93, Q.493 Ligands: NAG.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.493 NAG.5: 3 residues within 4Å: Chain A: P.211, N.221, T.224 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.221 NAG.6: 3 residues within 4Å: Chain A: Y.155, N.160, T.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.162, A:T.162 NAG.7: 3 residues within 4Å: Chain A: N.478, G.481, D.482 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.478, A:D.482, A:D.482 NAG.8: 3 residues within 4Å: Chain A: N.93, N.497 Ligands: NAG.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.497 NAG.10: 4 residues within 4Å: Chain B: Q.339, N.341, V.345, T.359 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain B: N.18, Y.423 No protein-ligand interaction detected (PLIP) NAG.12: 9 residues within 4Å: Chain B: F.268, D.269, H.270, Y.337, N.364, A.365, T.366, H.368, A.369 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:A.365, B:T.366 Hydrogen bonds: B:H.270, B:Y.337, B:T.366, B:A.369 NAG.13: 3 residues within 4Å: Chain B: S.210, P.211, N.221 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.221 NAG.14: 2 residues within 4Å: Chain B: N.160, T.162 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.162 NAG.15: 2 residues within 4Å: Chain B: N.478, G.481 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.478 NAG.16: 4 residues within 4Å: Chain B: D.90, E.91, N.93 Ligands: NAG.17 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.93 NAG.17: 4 residues within 4Å: Chain B: N.93, Q.493, N.497 Ligands: NAG.16 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.493

1 x CA: CALCIUM ION(Non-covalent)

CA.9: 6 residues within 4Å: Chain A: H.59, N.71, D.73 Chain B: H.59, N.71, D.73 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:H.59, A:D.73, B:H.59, B:D.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, Y. et al., Plant myrosinase TGG1 from Arabidopsis thaliana. To Be Published

Release Date

2023-03-08

Peptides

Myrosinase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Myrosinase 1

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