SMTL ID : 7z4j.1

SpCas9 bound to 18-nucleotide complementary DNA substrate in the catalytic state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: U.52 No protein-ligand interaction detected (PLIP) MG.2: 4 residues within 4Å: Chain D: T.32 Chain E: D.10, H.983 Ligands: MG.3 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:D.10, E:H.983 MG.3: 6 residues within 4Å: Chain D: A.31, T.32 Chain E: D.10, I.11, E.762 Ligands: MG.2 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:D.10, E:E.762 MG.4: 7 residues within 4Å: Chain B: G.13 Chain C: G.1, T.2 Chain E: D.839, H.840, N.863, K.866 3 PLIP interactions: 1 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.839, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pacesa, M. et al., R-loop formation and conformational activation mechanisms of Cas9. Nature (2022)

Release Date

2022-08-31

Peptides

CRISPR-associated endonuclease Cas9/Csn1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

E
B

CRISPR-associated endonuclease Cas9/Csn1

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