- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
K.2: 6 residues within 4Å:- Chain A: N.69, S.71, D.102, T.103, S.228, K.255
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:S.71, A:D.102, H2O.5
K.8: 6 residues within 4Å:- Chain B: N.69, S.71, D.102, T.103, S.228, K.255
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:S.71, B:D.102, H2O.12
K.14: 6 residues within 4Å:- Chain C: N.69, S.71, D.102, T.103, S.228, K.255
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:S.71, C:D.102, H2O.19
K.20: 6 residues within 4Å:- Chain D: N.69, S.71, D.102, T.103, S.228, K.255
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:S.71, D:D.102, H2O.26
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 5 residues within 4Å:- Chain A: T.417, E.418, S.439, A.440, V.459
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.418, A:E.418, A:A.440
GOL.5: 3 residues within 4Å:- Chain A: G.221, N.223, K.446
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.223, A:K.446, A:K.446
GOL.9: 5 residues within 4Å:- Chain B: T.417, E.418, S.439, A.440, V.459
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.418, B:E.418, B:A.440
GOL.11: 3 residues within 4Å:- Chain B: G.221, N.223, K.446
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.223, B:K.446, B:K.446
GOL.15: 5 residues within 4Å:- Chain C: T.417, E.418, S.439, A.440, V.459
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.418, C:A.440
GOL.17: 3 residues within 4Å:- Chain C: G.221, N.223, K.446
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.223, C:K.446, C:K.446
GOL.21: 5 residues within 4Å:- Chain D: T.417, E.418, S.439, A.440, V.459
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:E.418, D:A.440
GOL.23: 3 residues within 4Å:- Chain D: G.221, N.223, K.446
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.223, D:K.446, D:K.446
- 8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.4: 8 residues within 4Å:- Chain A: L.159, P.196, G.283, M.284, I.286, S.287, P.288
- Chain B: R.324
No protein-ligand interaction detected (PLIP)PEG.6: 7 residues within 4Å:- Chain A: K.251, D.273, P.308, R.424, C.447, V.450, H.451
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.251, A:D.273, A:R.424, A:C.447
PEG.10: 8 residues within 4Å:- Chain A: R.324
- Chain B: L.159, P.196, G.283, M.284, I.286, S.287, P.288
No protein-ligand interaction detected (PLIP)PEG.12: 7 residues within 4Å:- Chain B: K.251, D.273, P.308, R.424, C.447, V.450, H.451
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.251, B:D.273, B:R.424, B:C.447
PEG.16: 8 residues within 4Å:- Chain C: L.159, P.196, G.283, M.284, I.286, S.287, P.288
- Chain D: R.324
No protein-ligand interaction detected (PLIP)PEG.18: 7 residues within 4Å:- Chain C: K.251, D.273, P.308, R.424, C.447, V.450, H.451
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:K.251, C:R.424, C:C.447
PEG.22: 8 residues within 4Å:- Chain C: R.324
- Chain D: L.159, P.196, G.283, M.284, I.286, S.287, P.288
No protein-ligand interaction detected (PLIP)PEG.24: 7 residues within 4Å:- Chain D: K.251, D.273, P.308, R.424, C.447, V.450, H.451
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.251, D:R.424, D:C.447
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dillenberger, M. et al., Prominent role of cysteine residues C49 and C343 in regulating Plasmodium falciparum pyruvate kinase activity. Structure (2022)
- Release Date
- 2022-08-24
- Peptides
- Pyruvate kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dillenberger, M. et al., Prominent role of cysteine residues C49 and C343 in regulating Plasmodium falciparum pyruvate kinase activity. Structure (2022)
- Release Date
- 2022-08-24
- Peptides
- Pyruvate kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A