SMTL ID : 7z51.1 (2 other biounits)

Tick-borne encephalitis virus Kuutsalo-14

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 2 residues within 4Å: Chain A: N.154 Chain B: H.104 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.2: 2 residues within 4Å: Chain A: H.104 Chain B: N.154 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:H.104 NAG-NAG-FUC.3: 2 residues within 4Å: Chain C: N.154, E.155 No protein-ligand interaction detected (PLIP)

6 x CPL: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

CPL.4: 9 residues within 4Å: Chain A: I.410, L.413, T.414, V.415, G.417, H.438, G.442 Chain E: G.10, T.13 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.410, A:L.413 Salt bridges: A:H.438, A:H.438 CPL.5: 7 residues within 4Å: Chain A: K.405, T.406, G.409, I.410, R.412, A.420, W.421 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.406 Salt bridges: A:R.412 CPL.6: 7 residues within 4Å: Chain B: T.414, V.415, G.417, H.438, M.490 Chain F: G.10, T.13 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.438, B:H.438 CPL.7: 7 residues within 4Å: Chain B: K.405, T.406, G.409, I.410, R.412, W.421, F.423 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:I.410 Salt bridges: B:K.405, B:R.412 CPL.8: 4 residues within 4Å: Chain C: L.413, T.414, H.438, M.490 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.413 Salt bridges: C:H.438, C:H.438 CPL.9: 7 residues within 4Å: Chain C: K.405, T.406, G.409, I.410, R.412, A.420, F.423 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.410 Salt bridges: C:R.412

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pulkkinen, L.I.A. et al., Molecular Organisation of Tick-Borne Encephalitis Virus. Viruses (2022)

Release Date

2022-04-20

Peptides

Envelope protein E: ABC
Small envelope protein M: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Envelope protein E

Small envelope protein M

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