SMTL ID : 7z5n.4 (7 other biounits)

Crystal structure of DYRK1A in complex with CX-4945

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

monomer

Ligands

1 x 3NG: 5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid(Non-covalent)

3NG.1: 15 residues within 4Å: Chain A: I.40, G.41, K.42, F.45, V.48, A.61, K.63, V.97, F.113, E.114, M.115, L.116, L.169, V.181, D.182 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.40, A:V.48, A:A.61, A:V.97, A:F.113, A:F.113, A:L.169, A:V.181, A:V.181 Hydrogen bonds: A:L.116, A:D.182, A:D.182 Salt bridges: A:K.63

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: V.10, Y.11, N.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.12, A:D.13 SO4.3: 3 residues within 4Å: Chain A: G.43, S.44, K.164 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.44 Salt bridges: A:K.164 SO4.4: 2 residues within 4Å: Chain A: R.175, S.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.176, A:S.176 Salt bridges: A:R.175

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 4 residues within 4Å: Chain A: D.37, S.38, K.50, W.59 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.37, A:S.38, A:K.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grygier, P. et al., Crystal structure DYRK1A in complex with CX-4945. To Be Published

Release Date

2023-03-22

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Dual specificity tyrosine-phosphorylation-regulated kinase 1A

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