SMTL ID : 7z88.1

DNA-PK in the intermediate state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x 1IX: (~{S})-[2-chloranyl-4-fluoranyl-5-(7-morpholin-4-ylquinazolin-4-yl)phenyl]-(6-methoxypyridazin-3-yl)methanol(Non-covalent)

1IX.1: 16 residues within 4Å: Chain A: M.3729, A.3730, S.3731, P.3735, L.3751, K.3753, Y.3791, I.3803, E.3804, W.3805, L.3806, T.3809, N.3926, M.3929, I.3940, D.3941 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.3751, A:W.3805, A:W.3805, A:I.3940 Hydrogen bonds: A:L.3806, A:D.3941 Halogen bonds: A:A.3730

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, S. et al., Human DNA-dependent protein kinase activation mechanism. Nat.Struct.Mol.Biol. (2023)

Release Date

2023-01-18

Peptides

DNA-dependent protein kinase catalytic subunit: A
X-ray repair cross-complementing protein 6: B
X-ray repair cross-complementing protein 5: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DNA-dependent protein kinase catalytic subunit

X-ray repair cross-complementing protein 6

X-ray repair cross-complementing protein 5

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