SMTL ID : 7z9a.1

Sam68

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

homo-dimer

Ligands

12 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 4 residues within 4Å: Chain A: Y.26, P.27, K.28, F.29 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.28, A:F.29 NO3.2: 5 residues within 4Å: Chain A: M.1, E.2 Chain B: K.16, R.18, F.89 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.2, B:R.18 NO3.3: 3 residues within 4Å: Chain A: N.30, G.33, R.63 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.30, A:N.30, A:R.63 NO3.4: 3 residues within 4Å: Chain A: S.9, H.10, K.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.10, A:H.10, A:K.11 NO3.5: 3 residues within 4Å: Chain A: H.10, K.11, N.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.12, A:N.12 NO3.6: 4 residues within 4Å: Chain A: E.48, E.49, T.50, G.51 No protein-ligand interaction detected (PLIP) NO3.11: 4 residues within 4Å: Chain B: Y.26, P.27, K.28, F.29 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.28, B:F.29 NO3.12: 5 residues within 4Å: Chain A: K.16, R.18, F.89 Chain B: M.1, E.2 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.18, B:E.2 NO3.13: 3 residues within 4Å: Chain B: N.30, G.33, R.63 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.30, B:N.30, B:R.63 NO3.14: 3 residues within 4Å: Chain B: S.9, H.10, K.11 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.10, B:H.10, B:K.11 NO3.15: 3 residues within 4Å: Chain B: H.10, K.11, N.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.12, B:N.12 NO3.16: 4 residues within 4Å: Chain B: E.48, E.49, T.50, G.51 No protein-ligand interaction detected (PLIP)

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 3 residues within 4Å: Chain A: E.2, Y.4 Chain B: M.84 No protein-ligand interaction detected (PLIP) EDO.8: 2 residues within 4Å: Chain A: L.7, F.8 No protein-ligand interaction detected (PLIP) EDO.17: 3 residues within 4Å: Chain A: M.84 Chain B: E.2, Y.4 No protein-ligand interaction detected (PLIP) EDO.18: 2 residues within 4Å: Chain B: L.7, F.8 No protein-ligand interaction detected (PLIP)

4 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.9: 4 residues within 4Å: Chain A: A.104, H.105, C.108 Ligands: PGO.19 No protein-ligand interaction detected (PLIP) PGO.10: 2 residues within 4Å: Chain A: K.34, K.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.34, A:K.34 PGO.19: 4 residues within 4Å: Chain B: A.104, H.105, C.108 Ligands: PGO.9 No protein-ligand interaction detected (PLIP) PGO.20: 2 residues within 4Å: Chain B: K.34, K.112 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.34, B:K.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nadal, M. et al., Structure and function analysis of Sam68 and hnRNP A1 synergy in the exclusion of exon 7 from SMN2 transcripts. Protein Sci. (2023)

Release Date

2023-02-01

Peptides

Isoform 2 of KH domain-containing, RNA-binding, signal transduction-associated protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
AAA

Isoform 2 of KH domain-containing, RNA-binding, signal transduction-associated protein 1