SMTL ID : 7zac.1

Sam68

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-dimer

Ligands

10 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 4 residues within 4Å: Chain A: Y.23, P.24, K.25, F.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.25, A:F.26 NO3.2: 7 residues within 4Å: Chain A: L.4, P.92, P.93, C.94, E.95 Chain B: K.108 Ligands: NO3.5 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:P.92, A:C.94, A:E.95, B:K.108 NO3.3: 2 residues within 4Å: Chain A: L.68, Y.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.76 NO3.4: 2 residues within 4Å: Chain A: K.8, N.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.9, A:N.9, A:N.9 NO3.5: 5 residues within 4Å: Chain A: L.4, F.5 Chain B: K.108, V.112 Ligands: NO3.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.108 NO3.14: 4 residues within 4Å: Chain B: Y.23, P.24, K.25, F.26 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.25, B:F.26 NO3.15: 7 residues within 4Å: Chain A: K.108 Chain B: L.4, P.92, P.93, C.94, E.95 Ligands: NO3.18 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.92, B:C.94, B:E.95, A:K.108 NO3.16: 2 residues within 4Å: Chain B: L.68, Y.76 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.76, B:Y.76 NO3.17: 2 residues within 4Å: Chain B: K.8, N.9 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.9, B:N.9, B:N.9 NO3.18: 5 residues within 4Å: Chain A: K.108, V.112 Chain B: L.4, F.5 Ligands: NO3.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.108

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 2 residues within 4Å: Chain A: S.6, H.7 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: V.20, F.26, N.27, F.28, V.29, L.83 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: L.68, R.69, G.72, D.73, Y.76, N.80 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: K.31, K.109, F.110 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: R.15, L.54, H.78, F.86 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: N.27, G.30, R.60 Ligand excluded by PLIP EDO.12: 1 residues within 4Å: Chain A: N.27 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain A: Y.1, L.2, D.3, S.6, K.8, P.93 Ligand excluded by PLIP EDO.19: 2 residues within 4Å: Chain B: S.6, H.7 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain B: V.20, F.26, N.27, F.28, V.29, L.83 Ligand excluded by PLIP EDO.21: 6 residues within 4Å: Chain B: L.68, R.69, G.72, D.73, Y.76, N.80 Ligand excluded by PLIP EDO.22: 3 residues within 4Å: Chain B: K.31, K.109, F.110 Ligand excluded by PLIP EDO.23: 4 residues within 4Å: Chain B: R.15, L.54, H.78, F.86 Ligand excluded by PLIP EDO.24: 3 residues within 4Å: Chain B: N.27, G.30, R.60 Ligand excluded by PLIP EDO.25: 1 residues within 4Å: Chain B: N.27 Ligand excluded by PLIP EDO.26: 6 residues within 4Å: Chain B: Y.1, L.2, D.3, S.6, K.8, P.93 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nadal, M. et al., Structure and function analysis of Sam68 and hnRNP A1 synergy in the exclusion of exon 7 from SMN2 transcripts. Protein Sci. (2023)

Release Date

2023-02-01

Peptides

KHDR1 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
AAA

KHDR1 protein