SMTL ID : 7zaf.1

Sam68

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

homo-dimer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: Y.24, P.25, K.26 Ligand excluded by PLIP IOD.15: 3 residues within 4Å: Chain B: Y.24, P.25, K.26 Ligand excluded by PLIP

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: P.25 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: F.27, N.28, F.29, V.30 Ligand excluded by PLIP CL.16: 1 residues within 4Å: Chain B: P.25 Ligand excluded by PLIP CL.17: 4 residues within 4Å: Chain B: F.27, N.28, F.29, V.30 Ligand excluded by PLIP

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: A.102, H.103, E.106 Ligand excluded by PLIP EDO.5: 2 residues within 4Å: Chain A: G.72, D.74 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: R.61, D.62, K.63 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: N.1 Chain B: R.16, M.82 Ligands: GOL.28 Ligand excluded by PLIP EDO.8: 2 residues within 4Å: Chain A: R.70, K.71 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: H.8, K.9, N.10, F.91 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: N.10, M.11, K.12 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: K.32, K.110, F.111 Ligand excluded by PLIP EDO.12: 2 residues within 4Å: Chain A: N.28, R.61 Ligand excluded by PLIP EDO.18: 3 residues within 4Å: Chain B: A.102, H.103, E.106 Ligand excluded by PLIP EDO.19: 2 residues within 4Å: Chain B: G.72, D.74 Ligand excluded by PLIP EDO.20: 3 residues within 4Å: Chain B: R.61, D.62, K.63 Ligand excluded by PLIP EDO.21: 4 residues within 4Å: Chain A: R.16, M.82 Chain B: N.1 Ligands: GOL.14 Ligand excluded by PLIP EDO.22: 2 residues within 4Å: Chain B: R.70, K.71 Ligand excluded by PLIP EDO.23: 4 residues within 4Å: Chain B: H.8, K.9, N.10, F.91 Ligand excluded by PLIP EDO.24: 3 residues within 4Å: Chain B: N.10, M.11, K.12 Ligand excluded by PLIP EDO.25: 3 residues within 4Å: Chain B: K.32, K.110, F.111 Ligand excluded by PLIP EDO.26: 2 residues within 4Å: Chain B: N.28, R.61 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.13: 2 residues within 4Å: Chain A: K.12, K.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.12, A:K.14, A:K.14 GOL.14: 4 residues within 4Å: Chain A: K.14, R.16, F.87 Ligands: EDO.21 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.16 GOL.27: 2 residues within 4Å: Chain B: K.12, K.14 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.12, B:K.14, B:K.14 GOL.28: 4 residues within 4Å: Chain B: K.14, R.16, F.87 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nadal, M. et al., Structure and function analysis of Sam68 and hnRNP A1 synergy in the exclusion of exon 7 from SMN2 transcripts. Protein Sci. (2023)

Release Date

2023-02-01

Peptides

KH domain-containing, RNA-binding, signal transduction-associated protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
AAA

KH domain-containing, RNA-binding, signal transduction-associated protein 1

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