SMTL ID : 7zam.1

Sam68

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-dimer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: Y.25, P.26, K.27, F.28 Ligand excluded by PLIP IOD.13: 4 residues within 4Å: Chain B: Y.25, P.26, K.27, F.28 Ligand excluded by PLIP

15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: N.29, F.30, V.31 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.29, A:F.30, A:V.31 EDO.3: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.71 EDO.4: 1 residues within 4Å: Chain A: N.82 No protein-ligand interaction detected (PLIP) EDO.5: 3 residues within 4Å: Chain A: S.8, H.9, K.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.9, A:K.10 EDO.6: 6 residues within 4Å: Chain A: L.6, P.94, P.95, C.96, E.97 Chain B: K.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.96, A:E.97 EDO.7: 5 residues within 4Å: Chain A: L.4, D.5, S.8, K.10, N.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.5, A:D.5, A:S.8 EDO.8: 3 residues within 4Å: Chain A: G.73, G.74, D.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.73 EDO.9: 1 residues within 4Å: Chain A: R.17 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.17 EDO.10: 2 residues within 4Å: Chain A: K.33, K.111 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.33, A:K.33 EDO.11: 2 residues within 4Å: Chain A: K.10, N.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11 EDO.16: 5 residues within 4Å: Chain B: L.4, D.5, S.8, K.10, P.95 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.8 EDO.17: 3 residues within 4Å: Chain B: G.73, G.74, D.75 No protein-ligand interaction detected (PLIP) EDO.18: 1 residues within 4Å: Chain B: K.33 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.33, B:K.33 EDO.19: 1 residues within 4Å: Chain B: R.17 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.17 EDO.20: 2 residues within 4Å: Chain B: S.8, H.9 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.9, B:H.9

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 2 residues within 4Å: Chain A: K.13, K.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.13, A:K.15

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.14: 6 residues within 4Å: Chain A: K.110 Chain B: L.6, P.94, P.95, C.96, E.97 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:K.110 Hydrogen bonds: B:P.94, B:C.96, B:E.97 SO4.15: 3 residues within 4Å: Chain B: K.13, K.15, E.90 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.13, B:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nadal, M. et al., Structure and function analysis of Sam68 and hnRNP A1 synergy in the exclusion of exon 7 from SMN2 transcripts. Protein Sci. (2023)

Release Date

2023-02-01

Peptides

Isoform 2 of KH domain-containing, RNA-binding, signal transduction-associated protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

Isoform 2 of KH domain-containing, RNA-binding, signal transduction-associated protein 1

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