- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.63 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.1: 3 residues within 4Å:- Chain A: Q.74, L.75, R.76
No protein-ligand interaction detected (PLIP)DMS.2: 10 residues within 4Å:- Chain A: M.6, A.7, F.8, S.113, Q.127, D.295, R.298, F.305
- Chain B: S.123, G.124
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.298
- Salt bridges: A:D.295
- pi-Cation interactions: A:F.8
DMS.3: 13 residues within 4Å:- Chain A: K.5, M.6, A.7, V.125, Y.126, Q.127
- Chain B: K.5, M.6, A.7, V.125, Y.126, Q.127
- Ligands: DMS.8
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.7, B:Q.127
DMS.5: 8 residues within 4Å:- Chain A: C.22, G.23, T.24, T.25, V.42, I.43, T.45, K.61
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.61
DMS.6: 3 residues within 4Å:- Chain B: Q.74, L.75, R.76
No protein-ligand interaction detected (PLIP)DMS.7: 10 residues within 4Å:- Chain A: S.123, G.124
- Chain B: M.6, A.7, F.8, S.113, Q.127, D.295, R.298, F.305
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.295, B:R.298
- Salt bridges: B:D.295
- pi-Cation interactions: B:F.8
DMS.8: 13 residues within 4Å:- Chain A: K.5, M.6, A.7, V.125, Y.126, Q.127
- Chain B: K.5, M.6, A.7, V.125, Y.126, Q.127
- Ligands: DMS.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.7, A:Q.127
DMS.10: 8 residues within 4Å:- Chain B: C.22, G.23, T.24, T.25, V.42, I.43, T.45, K.61
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.61
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 9 residues within 4Å:- Chain A: M.17, V.18, Q.19, Q.69, A.70, G.71, N.119, G.120, S.121
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.71, A:G.71
GOL.9: 9 residues within 4Å:- Chain B: M.17, V.18, Q.19, Q.69, A.70, G.71, N.119, G.120, S.121
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.71, B:G.71
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Funk, L.M. et al., Multiple redox switches of the SARS-CoV-2 main protease in vitro provide opportunities for drug design. Nat Commun (2024)
- Release Date
- 2022-06-01
- Peptides
- 3C-like proteinase nsp5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.63 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Funk, L.M. et al., Multiple redox switches of the SARS-CoV-2 main protease in vitro provide opportunities for drug design. Nat Commun (2024)
- Release Date
- 2022-06-01
- Peptides
- 3C-like proteinase nsp5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A