SMTL ID : 7zc9.2 (1 other biounit)

Human Pikachurin/EGFLAM C-terminal Laminin-G domain (LG3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.39, G.40, S.41, R.42 Ligands: SO4.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.41, A:R.42 Water bridges: A:S.39, A:S.41, A:S.41 SO4.2: 4 residues within 4Å: Chain A: M.135, M.136, R.137, Q.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.137, A:Q.138 Water bridges: A:N.140 SO4.3: 4 residues within 4Å: Chain A: K.36, S.39, R.61, I.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.39 Salt bridges: A:R.61 SO4.4: 4 residues within 4Å: Chain A: R.37, R.42, S.175 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.42 Water bridges: A:S.175, A:S.175 SO4.5: 3 residues within 4Å: Chain A: T.52, A.53, K.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.52, A:K.54 SO4.6: 1 residues within 4Å: Chain A: R.37 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.37 SO4.7: 3 residues within 4Å: Chain A: Y.125, G.126, R.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.126 Salt bridges: A:R.128 SO4.8: 4 residues within 4Å: Chain A: G.189, K.190, N.191, I.192 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.191, A:N.191, A:I.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patil, D.N. et al., Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179. Sci.Signal. (2023)

Release Date

2023-07-19

Peptides

Pikachurin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pikachurin

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