SMTL ID : 7zcb.2 (1 other biounit)

Human Pikachurin/EGFLAM N-terminal Fibronectin-III (1-2) domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: N.33, T.35, A.36, V.86, G.88, S.207 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.86

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.115, H.116 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: P.131, Q.132, Q.133, W.215 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: Q.199 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: F.171, D.193, T.196 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: K.174, S.177 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patil, D.N. et al., Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179. Sci.Signal. (2023)

Release Date

2023-07-19

Peptides

Pikachurin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Pikachurin

Related Entries With Identical Sequence