- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x OGA: N-OXALYLGLYCINE(Non-covalent)
OGA.2: 15 residues within 4Å:- Chain A: Y.145, G.152, F.153, H.156, D.158, N.162, I.164, K.171, W.173, L.229, H.235, T.237, N.247
- Ligands: MN.1, GOL.3
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.162, A:T.237, A:N.247
- Water bridges: A:K.171, A:K.171, A:T.249
- Salt bridges: A:K.171, A:H.235
OGA.10: 16 residues within 4Å:- Chain B: Y.145, G.152, F.153, H.156, D.158, N.162, I.164, K.171, W.173, L.229, H.235, T.237, N.247
- Ligands: MN.9, GOL.11, GOL.14
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:Y.145, B:N.162, B:T.237, B:T.237, B:N.247
- Water bridges: B:K.171, B:K.171
- Salt bridges: B:K.171, B:H.235
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 9 residues within 4Å:- Chain A: R.91, E.110, Y.145, F.153, H.156, D.158, H.187
- Ligands: MN.1, OGA.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.91, A:E.110
- Water bridges: A:H.187
GOL.4: 8 residues within 4Å:- Chain A: A.176, K.177, N.178, E.179, P.209, D.215, A.216, W.234
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.177, A:K.177
- Water bridges: A:E.179, A:D.215, A:D.215
GOL.5: 9 residues within 4Å:- Chain A: S.139, A.159, Y.160, M.185, G.251, Q.252, P.253, F.322, D.323
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.139, A:S.139, A:A.159, A:M.185, A:Q.252
GOL.11: 10 residues within 4Å:- Chain B: R.91, E.110, Y.145, F.153, H.156, D.158, H.187
- Ligands: MN.9, OGA.10, GOL.14
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.91, B:D.158
- Water bridges: B:D.112, B:D.158, B:H.187
GOL.12: 10 residues within 4Å:- Chain B: S.139, A.159, Y.160, G.251, Q.252, P.253, A.254, D.257, F.322, D.323
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:S.139, B:A.159, B:Q.252, B:D.257, B:D.323, B:D.323
- Water bridges: B:S.139
GOL.13: 4 residues within 4Å:- Chain B: P.26, V.27, T.28, E.31
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:P.26, B:E.31
- Water bridges: B:E.31, B:E.31
GOL.14: 11 residues within 4Å:- Chain B: K.141, I.143, Y.145, D.158, Y.160, N.162, N.247, T.249
- Ligands: MN.9, OGA.10, GOL.11
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Y.145, B:D.158, B:N.162, B:N.247, B:T.249
GOL.15: 9 residues within 4Å:- Chain B: D.79, G.150, G.151, G.152, F.153, K.154, S.236, T.237, K.238
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.237, B:T.237, B:K.238
- Water bridges: B:D.79, B:D.79, B:K.154
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 3 residues within 4Å:- Chain A: T.28, S.30, E.31
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.28, A:T.28, A:S.30
- Water bridges: A:E.35, A:E.35, A:E.35
SO4.7: 6 residues within 4Å:- Chain A: K.154, A.155, K.174, D.212, L.213, S.236
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:A.155, A:S.236
- Water bridges: A:E.211, A:D.212, A:D.212, A:T.237
- Salt bridges: A:K.154, A:K.174
SO4.8: 3 residues within 4Å:- Chain A: P.55, G.56, Q.120
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.56, A:Q.120
SO4.16: 4 residues within 4Å:- Chain A: R.133
- Chain B: L.283, H.284, S.287
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:H.284, B:S.287, B:S.287
- Salt bridges: A:R.133
SO4.17: 5 residues within 4Å:- Chain A: E.312, F.315, Q.316, Q.318
- Chain B: H.280
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Salt bridges: B:H.280
- Hydrogen bonds: A:F.315, A:Q.318
SO4.18: 4 residues within 4Å:- Chain A: N.271, R.274
- Chain B: S.182, K.205
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:S.182, B:S.182, A:N.271, A:R.274
- Water bridges: B:S.182, A:S.269
- Salt bridges: B:K.205
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chowdhury, R. et al., yxBC from Bacillus subtilis in complex with Mn and N-oxalylglycine (NOG). To Be Published
- Release Date
- 2023-04-05
- Peptides
- Uncharacterized protein YxbC: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x OGA: N-OXALYLGLYCINE(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chowdhury, R. et al., yxBC from Bacillus subtilis in complex with Mn and N-oxalylglycine (NOG). To Be Published
- Release Date
- 2023-04-05
- Peptides
- Uncharacterized protein YxbC: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D