SMTL ID : 7zck.1

Room temperature crystal structure of PhnD from Synechococcus MITS9220 in complex with phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: I.12, Y.47, G.65, S.127, T.128, S.129, H.159, D.206, Y.207 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.47, A:S.127, A:T.128, A:S.129, A:Y.207, A:Y.207 Water bridges: A:L.67 Salt bridges: A:H.159

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: E.125, R.131, K.273 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: K.214, D.216, Q.217 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: T.144, P.145, S.146 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: P.145, R.152, A.153 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: R.34, A.230 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: R.6, R.40 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: P.5, R.6, R.218 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain A: R.152, A.153, G.154, Y.171 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: Q.71, L.74, Q.75 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mikolajek, H. et al., Protein-to-structure pipeline for ambient-temperature in situ crystallography at VMXi. Iucrj (2023)

Release Date

2022-05-04

Peptides

Phosphonate ABC type transporter/ substrate binding component: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Phosphonate ABC type transporter/ substrate binding component

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