SMTL ID : 7zdi.1

PucB-LH2 complex from Rps. palustris

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-9-9-1-mer

Ligands

33 x BCL: BACTERIOCHLOROPHYLL A(Covalent)(Non-covalent)

BCL.1: 26 residues within 4Å: Chain A: P.17, L.20, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain B: F.32, I.35, A.36, A.39, H.40 Chain R: I.6, V.10, G.15, L.18, L.19, S.22, I.26, V.30 Ligands: BCL.5, IRM.38, BCL.40, BCL.42 16 PLIP interactions: 6 interactions with chain R, 8 interactions with chain A, 2 interactions with chain B, Hydrophobic interactions: R:I.6, R:V.10, R:L.18, R:L.19, R:I.26, R:V.30, A:L.20, A:W.40, A:F.41, A:F.41, A:F.41, A:Y.44, A:W.45, B:A.39 Metal complexes: A:H.31 Hydrogen bonds: B:H.40 BCL.2: 19 residues within 4Å: Chain A: M.1, N.2, Q.3, I.6 Chain B: V.25, I.26, T.29, R.30 Chain C: L.95 Chain D: L.20 Chain E: G.28, I.31, A.34, I.35 Ligands: IRM.3, IRM.4, BCL.5, BCL.6, BCL.13 9 PLIP interactions: 4 interactions with chain B, 4 interactions with chain E, 1 interactions with chain C, Hydrophobic interactions: B:V.25, B:I.26, B:R.30, E:I.31, E:I.31, E:I.31, E:I.35, C:L.95 Hydrogen bonds: B:R.30 BCL.5: 21 residues within 4Å: Chain A: V.23, I.26, A.27, V.30, H.31, W.40 Chain B: T.29, F.32, G.33, A.36, H.40, W.49 Chain D: Y.44, W.45 Chain E: I.35 Ligands: BCL.1, BCL.2, IRM.3, IRM.4, BCL.6, BCL.13 9 PLIP interactions: 5 interactions with chain B, 1 interactions with chain E, 2 interactions with chain A, 1 interactions with chain D, Hydrophobic interactions: B:T.29, B:F.32, B:W.49, B:W.49, E:I.35, A:V.30, A:W.40, D:Y.44 Metal complexes: B:H.40 BCL.6: 13 residues within 4Å: Chain B: R.30, I.31, G.33, A.34, I.37 Chain C: F.88, S.89, G.90, Y.91, P.92 Ligands: BCL.2, BCL.5, BCL.40 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain C, Hydrophobic interactions: B:R.30, B:I.31, B:A.34, B:I.37 Hydrogen bonds: C:Y.91 Metal complexes: C:S.89 BCL.7: 15 residues within 4Å: Chain C: H.8, S.9, G.10, H.11, P.12 Chain K: R.30, I.31, G.33, A.34, I.35, I.37, V.38 Ligands: BCL.20, BCL.23, BCL.27 5 PLIP interactions: 4 interactions with chain K, 1 interactions with chain C, Hydrophobic interactions: K:R.30, K:R.30, K:A.34, K:I.37 Metal complexes: C:S.9 BCL.8: 13 residues within 4Å: Chain C: Y.24, S.25, G.26, E.27, P.28 Chain M: R.30, G.33, A.34, I.37, V.38 Ligands: BCL.23, BCL.28, BCL.31 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain M, Metal complexes: C:S.25 Hydrophobic interactions: M:R.30, M:A.34, M:I.37 BCL.9: 12 residues within 4Å: Chain C: Y.40, S.41, G.42, T.43, P.44 Chain O: R.30, I.31, A.34, V.38 Ligands: BCL.28, BCL.32, BCL.35 6 PLIP interactions: 5 interactions with chain O, 1 interactions with chain C, Hydrophobic interactions: O:R.30, O:R.30, O:I.31, O:A.34, O:V.38 Metal complexes: C:S.41 BCL.10: 10 residues within 4Å: Chain C: F.56, S.57, G.58, T.59, P.60 Chain Q: R.30, A.34 Ligands: BCL.32, BCL.37, BCL.39 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain Q, Metal complexes: C:S.57 Hydrophobic interactions: Q:R.30, Q:A.34 BCL.11: 13 residues within 4Å: Chain C: F.72, S.73, G.74, A.75, P.76 Chain S: R.30, I.31, G.33, A.34, V.38 Ligands: BCL.37, BCL.40, BCL.42 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain S, Metal complexes: C:S.73 Hydrophobic interactions: S:R.30, S:I.31, S:A.34, S:V.38 BCL.12: 17 residues within 4Å: Chain D: M.1, N.2, Q.3, I.6 Chain E: V.25, I.26, T.29, R.30 Chain F: L.20 Chain G: G.28, I.31, A.34, I.35 Ligands: IRM.3, BCL.14, BCL.15, IRM.18 8 PLIP interactions: 4 interactions with chain E, 4 interactions with chain G, Hydrophobic interactions: E:V.25, E:I.26, E:R.30, G:I.31, G:I.31, G:A.34, G:I.35 Hydrogen bonds: E:R.30 BCL.13: 27 residues within 4Å: Chain A: I.6, V.10, G.15, L.18, L.19, S.22, V.23, I.26, V.30 Chain D: P.17, L.20, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain E: F.32, I.35, A.36, A.39, H.40 Ligands: BCL.2, IRM.4, BCL.5, BCL.14 17 PLIP interactions: 7 interactions with chain A, 8 interactions with chain D, 2 interactions with chain E, Hydrophobic interactions: A:I.6, A:V.10, A:L.18, A:L.19, A:V.23, A:I.26, A:V.30, D:L.20, D:W.40, D:F.41, D:F.41, D:F.41, D:Y.44, D:W.45, E:A.39 Metal complexes: D:H.31 Hydrogen bonds: E:H.40 BCL.14: 20 residues within 4Å: Chain D: V.23, I.26, A.27, V.30, H.31, W.40 Chain E: T.29, F.32, G.33, A.36, H.40, W.49 Chain F: Y.44, W.45 Chain G: I.35 Ligands: IRM.3, BCL.12, BCL.13, BCL.15, IRM.18 8 PLIP interactions: 2 interactions with chain D, 4 interactions with chain E, 1 interactions with chain G, 1 interactions with chain F, Hydrophobic interactions: D:V.30, D:W.40, E:T.29, E:W.49, E:W.49, G:I.35, F:Y.44 Metal complexes: E:H.40 BCL.15: 25 residues within 4Å: Chain D: I.6, V.10, G.15, L.18, S.22, I.26, V.30 Chain F: P.17, L.20, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain G: F.32, I.35, A.36, A.39, H.40 Ligands: IRM.3, BCL.12, BCL.14, BCL.17 15 PLIP interactions: 8 interactions with chain F, 5 interactions with chain D, 2 interactions with chain G, Hydrophobic interactions: F:L.20, F:W.40, F:F.41, F:F.41, F:F.41, F:Y.44, F:W.45, D:I.6, D:V.10, D:L.18, D:I.26, D:V.30, G:A.39 Metal complexes: F:H.31 Hydrogen bonds: G:H.40 BCL.16: 17 residues within 4Å: Chain F: M.1, N.2, Q.3, I.6 Chain G: V.25, I.26, T.29, R.30 Chain H: L.20 Chain I: G.28, I.31, A.34, I.35 Ligands: BCL.17, IRM.18, BCL.19, IRM.22 7 PLIP interactions: 4 interactions with chain G, 3 interactions with chain I, Hydrophobic interactions: G:V.25, G:I.26, G:R.30, I:I.31, I:A.34, I:I.35 Hydrogen bonds: G:R.30 BCL.17: 21 residues within 4Å: Chain F: V.23, I.26, A.27, V.30, H.31, W.40 Chain G: T.29, F.32, G.33, A.36, H.40, W.49 Chain H: Y.44, W.45 Chain I: I.31, I.35 Ligands: BCL.15, BCL.16, IRM.18, BCL.19, IRM.22 9 PLIP interactions: 1 interactions with chain H, 2 interactions with chain F, 4 interactions with chain G, 2 interactions with chain I, Hydrophobic interactions: H:Y.44, F:V.30, F:W.40, G:T.29, G:W.49, G:W.49, I:I.31, I:I.35 Metal complexes: G:H.40 BCL.19: 25 residues within 4Å: Chain F: I.6, V.10, L.18, S.22, V.23, I.26 Chain H: P.17, L.20, G.21, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain I: F.32, I.35, A.36, A.39, H.40 Ligands: BCL.16, BCL.17, IRM.18, BCL.21 15 PLIP interactions: 8 interactions with chain H, 5 interactions with chain F, 2 interactions with chain I, Hydrophobic interactions: H:L.20, H:W.40, H:F.41, H:F.41, H:F.41, H:Y.44, H:W.45, F:I.6, F:V.10, F:L.18, F:V.23, F:I.26, I:A.39 Metal complexes: H:H.31 Hydrogen bonds: I:H.40 BCL.20: 15 residues within 4Å: Chain C: H.8 Chain H: M.1, N.2, I.6 Chain I: V.25, I.26, T.29, R.30 Chain J: L.20 Chain K: G.28 Ligands: BCL.7, BCL.21, IRM.22, BCL.24, IRM.26 6 PLIP interactions: 5 interactions with chain I, 1 interactions with chain C, Hydrophobic interactions: I:V.25, I:I.26, I:T.29, I:R.30, C:H.8 Hydrogen bonds: I:R.30 BCL.21: 21 residues within 4Å: Chain H: V.23, I.26, A.27, V.30, H.31, W.40 Chain I: T.29, F.32, G.33, A.36, H.40, W.49 Chain J: Y.44, W.45 Chain K: I.31, I.35 Ligands: BCL.19, BCL.20, IRM.22, BCL.24, IRM.26 10 PLIP interactions: 1 interactions with chain J, 2 interactions with chain K, 5 interactions with chain I, 2 interactions with chain H, Hydrophobic interactions: J:Y.44, K:I.31, K:I.35, I:T.29, I:F.32, I:W.49, I:W.49, H:V.30, H:W.40 Metal complexes: I:H.40 BCL.23: 20 residues within 4Å: Chain C: L.15, Y.24 Chain J: M.1, N.2, Q.3, I.6 Chain K: V.25, I.26, T.29, R.30 Chain L: L.20 Chain M: G.28, I.31, I.35 Ligands: BCL.7, BCL.8, IRM.25, IRM.26, BCL.27, BCL.29 8 PLIP interactions: 2 interactions with chain C, 1 interactions with chain M, 5 interactions with chain K, Hydrophobic interactions: C:L.15, C:Y.24, M:I.31, K:V.25, K:I.26, K:I.26, K:R.30 Hydrogen bonds: K:R.30 BCL.24: 24 residues within 4Å: Chain H: I.6, V.10, L.18, S.22 Chain J: P.17, L.20, G.21, V.23, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain K: F.32, I.35, A.36, A.39, H.40 Ligands: BCL.20, BCL.21, IRM.22, BCL.27 15 PLIP interactions: 3 interactions with chain H, 2 interactions with chain K, 10 interactions with chain J, Hydrophobic interactions: H:I.6, H:V.10, H:L.18, K:A.39, J:L.20, J:L.20, J:V.23, J:W.40, J:F.41, J:F.41, J:F.41, J:Y.44, J:W.45 Hydrogen bonds: K:H.40 Metal complexes: J:H.31 BCL.27: 23 residues within 4Å: Chain J: V.23, I.26, A.27, V.30, H.31 Chain K: T.29, F.32, G.33, A.36, H.40, A.43, W.49 Chain L: Y.44, W.45 Chain M: I.31, F.32, I.35 Ligands: BCL.7, BCL.23, BCL.24, IRM.25, IRM.26, BCL.29 12 PLIP interactions: 7 interactions with chain K, 1 interactions with chain L, 1 interactions with chain J, 3 interactions with chain M, Hydrophobic interactions: K:T.29, K:A.43, K:W.49, K:W.49, K:W.49, L:Y.44, J:V.30, M:I.31, M:F.32, M:I.35 pi-Stacking: K:W.49 Metal complexes: K:H.40 BCL.28: 15 residues within 4Å: Chain C: L.31, Y.40 Chain L: M.1, I.6 Chain M: V.25, I.26, T.29, R.30 Chain O: G.28 Ligands: BCL.8, BCL.9, IRM.25, IRM.30, BCL.31, BCL.33 6 PLIP interactions: 4 interactions with chain M, 2 interactions with chain C, Hydrophobic interactions: M:V.25, M:I.26, M:R.30, C:L.31, C:Y.40 Hydrogen bonds: M:R.30 BCL.29: 22 residues within 4Å: Chain J: I.6, V.10, S.22 Chain L: P.17, L.20, G.21, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain M: F.32, I.35, A.36, A.39, H.40 Ligands: BCL.23, IRM.26, BCL.27, BCL.31 12 PLIP interactions: 2 interactions with chain M, 2 interactions with chain J, 8 interactions with chain L, Hydrophobic interactions: M:A.39, J:I.6, J:V.10, L:L.20, L:W.40, L:F.41, L:F.41, L:F.41, L:Y.44, L:W.45 Hydrogen bonds: M:H.40 Metal complexes: L:H.31 BCL.31: 24 residues within 4Å: Chain L: V.23, I.26, A.27, V.30, H.31, W.40 Chain M: T.29, F.32, G.33, A.36, H.40, W.49 Chain N: Y.44, W.45 Chain O: G.28, I.31, F.32, I.35 Ligands: BCL.8, IRM.25, BCL.28, BCL.29, IRM.30, BCL.33 11 PLIP interactions: 5 interactions with chain M, 3 interactions with chain O, 2 interactions with chain L, 1 interactions with chain N, Hydrophobic interactions: M:T.29, M:F.32, M:W.49, O:I.31, O:F.32, O:I.35, L:V.30, L:W.40, N:Y.44 pi-Stacking: M:W.49 Metal complexes: M:H.40 BCL.32: 17 residues within 4Å: Chain C: L.47 Chain N: M.1, N.2, Q.3, I.6 Chain O: V.25, I.26, T.29, R.30 Chain P: L.20 Chain Q: G.28 Ligands: BCL.9, BCL.10, IRM.30, IRM.34, BCL.35, BCL.36 6 PLIP interactions: 5 interactions with chain O, 1 interactions with chain C, Hydrophobic interactions: O:V.25, O:I.26, O:T.29, O:R.30, C:L.47 Hydrogen bonds: O:R.30 BCL.33: 23 residues within 4Å: Chain L: I.6, V.10, S.22 Chain N: P.17, L.20, G.21, V.23, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain O: F.32, I.35, A.36, A.39, H.40 Ligands: IRM.25, BCL.28, BCL.31, BCL.35 14 PLIP interactions: 10 interactions with chain N, 2 interactions with chain L, 2 interactions with chain O, Hydrophobic interactions: N:L.20, N:L.20, N:V.23, N:W.40, N:F.41, N:F.41, N:F.41, N:Y.44, N:W.45, L:I.6, L:V.10, O:A.39 Metal complexes: N:H.31 Hydrogen bonds: O:H.40 BCL.35: 24 residues within 4Å: Chain N: V.23, I.26, A.27, V.30, H.31, W.40 Chain O: T.29, F.32, G.33, A.36, H.40, A.43, W.49 Chain P: Y.44, W.45 Chain Q: G.28, I.31, I.35 Ligands: BCL.9, IRM.30, BCL.32, BCL.33, IRM.34, BCL.36 14 PLIP interactions: 2 interactions with chain Q, 8 interactions with chain O, 1 interactions with chain P, 3 interactions with chain N, Hydrophobic interactions: Q:I.31, Q:I.35, O:T.29, O:F.32, O:A.43, O:W.49, O:W.49, O:W.49, P:Y.44, N:V.30, N:W.40 pi-Stacking: O:W.49 Metal complexes: O:H.40 Hydrogen bonds: N:H.31 BCL.36: 23 residues within 4Å: Chain N: I.6, S.22, V.30 Chain P: P.17, L.20, G.21, T.24, A.27, H.31, V.34, W.40, F.41, Y.44, W.45 Chain Q: F.32, I.35, A.36, A.39, H.40 Ligands: IRM.30, BCL.32, BCL.35, BCL.39 14 PLIP interactions: 10 interactions with chain P, 2 interactions with chain N, 2 interactions with chain Q, Hydrophobic interactions: P:L.20, P:L.20, P:V.34, P:W.40, P:F.41, P:F.41, P:F.41, P:Y.44, P:W.45, N:I.6, N:V.30, Q:A.39 Metal complexes: P:H.31 Hydrogen bonds: Q:H.40 BCL.37: 19 residues within 4Å: Chain C: L.63 Chain P: M.1, N.2, Q.3, I.6 Chain Q: V.25, I.26, T.29, R.30 Chain R: L.20 Chain S: G.28, I.31, I.35 Ligands: BCL.10, BCL.11, IRM.34, IRM.38, BCL.39, BCL.41 6 PLIP interactions: 3 interactions with chain Q, 2 interactions with chain S, 1 interactions with chain C, Hydrophobic interactions: Q:V.25, Q:R.30, S:I.31, S:I.35, C:L.63 Hydrogen bonds: Q:R.30 BCL.39: 23 residues within 4Å: Chain P: V.23, I.26, A.27, V.30, H.31, W.40 Chain Q: T.29, F.32, G.33, A.36, H.40, A.43, W.49 Chain R: Y.44, W.45 Chain S: I.31, I.35 Ligands: BCL.10, IRM.34, BCL.36, BCL.37, IRM.38, BCL.41 13 PLIP interactions: 1 interactions with chain R, 7 interactions with chain Q, 3 interactions with chain P, 2 interactions with chain S, Hydrophobic interactions: R:Y.44, Q:T.29, Q:F.32, Q:A.43, Q:W.49, Q:W.49, P:V.30, P:W.40, S:I.31, S:I.35 pi-Stacking: Q:W.49 Metal complexes: Q:H.40 Hydrogen bonds: P:H.31 BCL.40: 19 residues within 4Å: Chain A: L.20 Chain B: G.28, I.31 Chain C: L.79, F.88 Chain R: M.1, N.2, Q.3, I.6 Chain S: V.25, I.26, T.29, R.30 Ligands: BCL.1, IRM.4, BCL.6, BCL.11, IRM.38, BCL.42 7 PLIP interactions: 2 interactions with chain C, 4 interactions with chain S, 1 interactions with chain B, Hydrophobic interactions: C:L.79, C:F.88, S:V.25, S:I.26, S:R.30, B:I.31 Hydrogen bonds: S:R.30 BCL.41: 26 residues within 4Å: Chain P: I.6, V.10, G.15, L.18, S.22, V.30 Chain R: P.17, L.20, G.21, T.24, A.27, H.31, V.34, W.40, F.41, Y.44, W.45 Chain S: F.32, I.35, A.36, A.39, H.40 Ligands: IRM.34, BCL.37, BCL.39, BCL.42 15 PLIP interactions: 9 interactions with chain R, 2 interactions with chain S, 4 interactions with chain P, Hydrophobic interactions: R:L.20, R:V.34, R:W.40, R:F.41, R:F.41, R:F.41, R:Y.44, R:W.45, S:A.39, P:I.6, P:V.10, P:L.18, P:V.30 Metal complexes: R:H.31 Hydrogen bonds: S:H.40 BCL.42: 22 residues within 4Å: Chain A: Y.44, W.45 Chain B: I.35 Chain R: V.23, I.26, A.27, V.30, H.31, W.40 Chain S: T.29, F.32, G.33, A.36, H.40, A.43, W.49 Ligands: BCL.1, IRM.4, BCL.11, IRM.38, BCL.40, BCL.41 12 PLIP interactions: 3 interactions with chain R, 1 interactions with chain B, 1 interactions with chain A, 7 interactions with chain S, Hydrophobic interactions: R:V.30, R:W.40, B:I.35, A:Y.44, S:T.29, S:F.32, S:A.43, S:W.49, S:W.49 Hydrogen bonds: R:H.31 pi-Stacking: S:W.49 Metal complexes: S:H.40

9 x IRM: 1,2-Dihydro-psi,psi-caroten-1-ol(Non-covalent)

IRM.3: 24 residues within 4Å: Chain A: Q.3, R.5, I.6, T.8, V.9 Chain B: W.9 Chain D: L.20, V.23, I.26, A.33 Chain E: E.20, L.21, H.24, V.25, G.28, T.29 Chain F: I.28, H.31, Y.32 Ligands: BCL.2, BCL.5, BCL.12, BCL.14, BCL.15 15 PLIP interactions: 3 interactions with chain F, 1 interactions with chain B, 4 interactions with chain D, 3 interactions with chain A, 4 interactions with chain E Hydrophobic interactions: F:I.28, F:H.31, F:Y.32, B:W.9, D:L.20, D:V.23, D:I.26, D:A.33, A:Q.3, A:I.6, A:V.9, E:E.20, E:L.21, E:H.24, E:T.29 IRM.4: 23 residues within 4Å: Chain A: L.20, V.23, I.26, A.33 Chain B: E.20, L.21, H.24, V.25, G.28, T.29 Chain D: H.31, Y.32, W.45 Chain R: Q.3, R.5, I.6, V.9 Chain S: W.9 Ligands: BCL.2, BCL.5, BCL.13, BCL.40, BCL.42 15 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A, 4 interactions with chain R, 3 interactions with chain D, 1 interactions with chain S Hydrophobic interactions: B:E.20, B:L.21, B:H.24, A:L.20, A:V.23, A:I.26, A:A.33, R:Q.3, R:I.6, R:I.6, R:V.9, D:H.31, D:Y.32, D:W.45, S:W.9 IRM.18: 23 residues within 4Å: Chain D: Q.3, R.5, I.6, V.9 Chain E: W.9 Chain F: L.20, V.23, I.26, A.33 Chain G: E.20, L.21, H.24, V.25, G.28, T.29 Chain H: I.28, H.31, Y.32 Ligands: BCL.12, BCL.14, BCL.16, BCL.17, BCL.19 14 PLIP interactions: 3 interactions with chain G, 3 interactions with chain H, 1 interactions with chain E, 3 interactions with chain D, 4 interactions with chain F Hydrophobic interactions: G:E.20, G:H.24, G:T.29, H:I.28, H:H.31, H:Y.32, E:W.9, D:Q.3, D:I.6, D:V.9, F:L.20, F:V.23, F:I.26, F:A.33 IRM.22: 24 residues within 4Å: Chain F: Q.3, R.5, I.6, T.8, V.9 Chain G: W.9 Chain H: L.20, V.23, I.26, A.33 Chain I: E.20, L.21, H.24, V.25, G.28, T.29 Chain J: I.28, H.31, Y.32 Ligands: BCL.16, BCL.17, BCL.20, BCL.21, BCL.24 13 PLIP interactions: 3 interactions with chain F, 4 interactions with chain H, 3 interactions with chain J, 2 interactions with chain I, 1 interactions with chain G Hydrophobic interactions: F:Q.3, F:I.6, F:V.9, H:L.20, H:V.23, H:I.26, H:A.33, J:I.28, J:H.31, J:Y.32, I:E.20, I:H.24, G:W.9 IRM.25: 23 residues within 4Å: Chain J: Q.3, R.5, I.6 Chain K: W.9 Chain L: L.20, V.23, I.26 Chain M: E.17, E.20, L.21, H.24, V.25, G.28, T.29 Chain N: A.27, H.31, Y.32, W.45 Ligands: BCL.23, BCL.27, BCL.28, BCL.31, BCL.33 14 PLIP interactions: 3 interactions with chain J, 4 interactions with chain N, 3 interactions with chain L, 3 interactions with chain M, 1 interactions with chain K Hydrophobic interactions: J:Q.3, J:I.6, J:I.6, N:A.27, N:H.31, N:Y.32, N:W.45, L:L.20, L:V.23, L:I.26, M:E.20, M:L.21, M:H.24, K:W.9 IRM.26: 24 residues within 4Å: Chain H: Q.3, R.5, I.6 Chain I: W.9 Chain J: L.20, V.23, I.26, A.33 Chain K: E.20, L.21, H.24, V.25, G.28, T.29 Chain L: A.27, I.28, H.31, Y.32, W.45 Ligands: BCL.20, BCL.21, BCL.23, BCL.27, BCL.29 14 PLIP interactions: 4 interactions with chain J, 5 interactions with chain L, 1 interactions with chain I, 2 interactions with chain H, 2 interactions with chain K Hydrophobic interactions: J:L.20, J:V.23, J:I.26, J:A.33, L:A.27, L:I.28, L:H.31, L:Y.32, L:W.45, I:W.9, H:I.6, H:I.6, K:E.20, K:H.24 IRM.30: 23 residues within 4Å: Chain L: Q.3, R.5, I.6 Chain M: W.9 Chain N: L.20, V.23, I.26 Chain O: E.20, L.21, H.24, V.25, G.28, T.29 Chain P: A.27, I.28, H.31, Y.32, W.45 Ligands: BCL.28, BCL.31, BCL.32, BCL.35, BCL.36 15 PLIP interactions: 1 interactions with chain M, 3 interactions with chain N, 5 interactions with chain P, 3 interactions with chain L, 3 interactions with chain O Hydrophobic interactions: M:W.9, N:L.20, N:V.23, N:I.26, P:A.27, P:I.28, P:H.31, P:Y.32, P:W.45, L:Q.3, L:I.6, L:I.6, O:E.20, O:L.21, O:H.24 IRM.34: 23 residues within 4Å: Chain N: Q.3, R.5, I.6 Chain O: W.9 Chain P: L.20, V.23, I.26, A.33 Chain Q: E.20, L.21, H.24, V.25, G.28, T.29 Chain R: A.27, H.31, Y.32, W.45 Ligands: BCL.32, BCL.35, BCL.37, BCL.39, BCL.41 15 PLIP interactions: 1 interactions with chain O, 4 interactions with chain P, 3 interactions with chain N, 4 interactions with chain R, 3 interactions with chain Q Hydrophobic interactions: O:W.9, P:L.20, P:V.23, P:I.26, P:A.33, N:Q.3, N:I.6, N:I.6, R:A.27, R:H.31, R:Y.32, R:W.45, Q:E.20, Q:L.21, Q:H.24 IRM.38: 21 residues within 4Å: Chain A: H.31, Y.32, W.45 Chain P: Q.3, R.5, I.6 Chain Q: W.9 Chain R: V.23, I.26, A.33 Chain S: E.20, L.21, H.24, V.25, G.28, T.29 Ligands: BCL.1, BCL.37, BCL.39, BCL.40, BCL.42 12 PLIP interactions: 3 interactions with chain R, 3 interactions with chain S, 3 interactions with chain A, 2 interactions with chain P, 1 interactions with chain Q Hydrophobic interactions: R:V.23, R:I.26, R:A.33, S:E.20, S:L.21, S:H.24, A:H.31, A:Y.32, A:W.45, P:Q.3, P:I.6, Q:W.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qian, P. et al., Cryo-EM structures of light-harvesting 2 complexes from Rhodopseudomonas palustris reveal the molecular origin of absorption tuning. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-10-05

Peptides

Light-harvesting protein: ADFHJLNPR
Light-harvesting protein: BEGIKMOQS
PucA-LH2-gamma: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
C

F
E

H
G

J
I

L
K

N
M

P
O

R
Q

B
B

E
D

G
F

I
H

K
J

M
L

O
N

Q
P

S
R

C
S

Membrane

We predict this structure to be a membrane protein.
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Light-harvesting protein

Light-harvesting protein

PucA-LH2-gamma

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