SMTL ID : 7zdq.1

Cryo-EM structure of Human ACE2 bound to a high-affinity SARS CoV-2 mutant

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: S.402, S.527, N.528 No protein-ligand interaction detected (PLIP) NAG.2: 2 residues within 4Å: Chain A: N.72, T.74 No protein-ligand interaction detected (PLIP) NAG.3: 4 residues within 4Å: Chain A: N.35, T.37, E.39, Q.322 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.37, A:E.39, A:E.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bate, N. et al., In vitro evolution predicts emerging SARS-CoV-2 mutations with high affinity for ACE2 and cross-species binding. Plos Pathog. (2022)

Release Date

2022-05-18

Peptides

Processed angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Processed angiotensin-converting enzyme 2

Spike protein S1