SMTL ID : 7zdv.1

IF(apo/as isolated) conformation of CydDC mutant (E500Q.C) in AMP-PNP(CydD) bound state (Dataset-20)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain B: S.390, Q.430 Ligands: ANP.2 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.390

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 14 residues within 4Å: Chain B: A.112, S.359, L.365, R.384, S.385, G.386, S.387, G.388, K.389, S.390, S.391, Q.430, H.542 Ligands: MG.1 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:A.112, B:S.359, B:G.386, B:S.387, B:G.388, B:K.389, B:K.389, B:K.389, B:S.390, B:S.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, D. et al., Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol. (2023)

Release Date

2023-04-19

Peptides

ATP-binding/permease protein CydC: A
ATP-binding/permease protein CydD: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Membrane

We predict this structure to be a membrane protein.
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ATP-binding/permease protein CydC

ATP-binding/permease protein CydD

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